Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04966 ATGGATTATCGATGGACCAAAGGTAAGCATGAATCTGGTAATCGTGACAGGAAGCAATTCAAAAAGGATCGGGCTTATGAGGAATCTCTTATTGATGATTTGGCTGAGGATTTTCGTTTGCCGAGAAATCAAAGACCAACGGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATTACTTCATCTAATGTTGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGATTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGGAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGGAAGCGGGAGAAGGCAGCATATAACATATATGCATGCCTTTTTACCGGATTGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCGTATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGTTTCCTCTGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTCCAAAGAAACCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 963 0.4164 MDYRWTKGKHESGNRDRKQFKKDRAYEESLIDDLAEDFRLPRNQRPTENVDLDNVEQASLDTQITSSNVGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGIGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREKAAYNIYACLFTGLVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVPKKPNVPVASIFGNDSDEE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04966 320 ProSitePatterns Zinc finger C2H2 type domain signature. 177 199 IPR013087 -
Trre13g04966 320 MobiDBLite consensus disorder prediction 208 275 - -
Trre13g04966 320 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Trre13g04966 320 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Trre13g04966 320 Coils Coil 116 143 - -
Trre13g04966 320 SMART G-patch_5 64 109 IPR000467 GO:0003676
Trre13g04966 320 SUPERFAMILY beta-beta-alpha zinc fingers 173 206 IPR036236 -
Trre13g04966 320 MobiDBLite consensus disorder prediction 208 236 - -
Trre13g04966 320 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 320 - -
Trre13g04966 320 MobiDBLite consensus disorder prediction 241 275 - -
Trre13g04966 320 MobiDBLite consensus disorder prediction 290 320 - -
Trre13g04966 320 Pfam Zinc-finger double-stranded RNA-binding 175 202 IPR022755 -
Trre13g04966 320 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04966 Trre-Chr13 55825555 55828269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04966 1 320 C2H2 Transcription Factor Family AT5G26610 61.994 9.68e-124 355