Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04961 ATGTCTAAAGAAAAAGTTGATCATAAAGAGATGAACAATTCTTCTGAACATGATCAATCTTCTGTACCCAAAAATGATTTGTTTGAGCTGGTTTTGGGAAATGGTCAGATTTCAGTGCAGGGTCAATCTAGTTCAATTTCCAATATAGGTAAAAAGAGTTCAACTTGTAAGAGTTTTCCATCTCATACTATTAGGGGTCATGGTAAAGATACAGGACAACATGGTAATGAAACAAATACAAGGATGAAAAAGTTTGAGGATATAGATAATGGTAATTTGAATGAAATTCTTACAAGGCATGTCTCTTCAAATCAAGATGAAGATGTGATGATGCCTTGGTTGAATTATGCAATGGATGAGCACTCTTTACAACATGACTATAATTATAGTTTCTTACATGAACTATCTGGTGGTGTGAACACAAATGACTTTGCTGCCTCAAATAAATTTTCTTTGTTTGATAGAAGAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGGATTCTGTATAAGGGTTCTTCAGTTGCAGCTGCGACAGAAGAATTTGAGACATTTGGACTAAAAAATAGCACCAATCAGTTATACGCGGCATCACAGTTGCATCAATGTCAACCTTCACATGATAATGATTCAAAAAGTAATGCAAACCAGCATGCACCTTGTGAAGAAATCTCTCATATTCCATCTTCATCAAACATAATGAATTTCACTCATTTTGCAAAACCTGTTGCTGTTGTGAAGGCTAATCTTCACAACATTGGTTTGACTTCTTCAAGATCAGAAATTTCAGGAATAAAGAATAAAGATGAAGCTGCAATAGGTATCAGTCCTCTTGAATCAACAAAAGTTGATTTAAGTGGAGATTGTCCAAAATATTCTGCCATACACTGTCATCATGCTGTGGAGCCGCCCAGGGTTGATTTGAAATCTTTGGAGCCGAAATCTCTTGAGCAAAACGCTGCTGTTTCTACGCCTGCTTGCAAAGATGTGTCCAAGTTTGATCAAACTTCCAATCAAGTTCTTGGTGAGAGTGGCAGAAAAGGTCAAGAAGGTGTTGAAAAATGTATGGAGCAAACAGTAGTCTCTTCCTCTGTTTGTTGTTCTGACAATGGCGCATATAGAGGTTCGGATGATGCAAATCAAAATTTGAAGCGAAAAAATCTAGACTCCGAGGATTCTGAGTGGAACAGTGAAGATGTTGAGGATGAATCATTTGGTGTTGTTAAACGGACAGCTCATGGACGGGGAGGTATGAAGAGAAACCGTTCAGCAGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCGTTGCAAGAGCTCATTCCAAATTGCAATAAGACAGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACGCTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGTTTATACATGCCTATGATGTTACCTGCAGGAATGCAACACATGCATGCAGCACACATGTCTCCCTTTTCACCGATGAATATTGGCATGCAAATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGCACATACATCTGGACTTGCTGCTTTACATGGGATGTCTAGACCAAATCATCAAATGTTTGGGCAAAACCTTGGAACTCATCTACCAATGCCATGTGCTCCAATGTTTTCTTATCCTGGAGAGTCTGTTATGAACTCATCACCTGTAGGATTAAATCCCAGTGGAACAGCAGGACTAATGGAAACCGTGGAATCAGTTTCAGCACCTAAGTTAATGGATCCAATGCCAAATGTGAACTCACAAGTTATGCAAAACAACGATGTCTGTAACTCAACAAATCAAATGTCTATCCAGGGTGAGGGTGAAACAAAAACTGGTGGACTCGAACAATCAAATTTGATACTTAATAGTGGTCATGCCTCGTCGATAAATGACAATGGAGCTGTTAATCCTGGTAAAGAAGACAACCTTGTGATTGATAAATCTCATGAGTAA 2031 0.3875 MSKEKVDHKEMNNSSEHDQSSVPKNDLFELVLGNGQISVQGQSSSISNIGKKSSTCKSFPSHTIRGHGKDTGQHGNETNTRMKKFEDIDNGNLNEILTRHVSSNQDEDVMMPWLNYAMDEHSLQHDYNYSFLHELSGGVNTNDFAASNKFSLFDRRSNCIQVFSDSHKQGILYKGSSVAAATEEFETFGLKNSTNQLYAASQLHQCQPSHDNDSKSNANQHAPCEEISHIPSSSNIMNFTHFAKPVAVVKANLHNIGLTSSRSEISGIKNKDEAAIGISPLESTKVDLSGDCPKYSAIHCHHAVEPPRVDLKSLEPKSLEQNAAVSTPACKDVSKFDQTSNQVLGESGRKGQEGVEKCMEQTVVSSSVCCSDNGAYRGSDDANQNLKRKNLDSEDSEWNSEDVEDESFGVVKRTAHGRGGMKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKTDKASMLDEAIEYLKTLQLQLQIMSMGGGGLYMPMMLPAGMQHMHAAHMSPFSPMNIGMQMGLGVPQFQGTHLPVAHTSGLAALHGMSRPNHQMFGQNLGTHLPMPCAPMFSYPGESVMNSSPVGLNPSGTAGLMETVESVSAPKLMDPMPNVNSQVMQNNDVCNSTNQMSIQGEGETKTGGLEQSNLILNSGHASSINDNGAVNPGKEDNLVIDKSHE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04961 676 MobiDBLite consensus disorder prediction 63 78 - -
Trre13g04961 676 MobiDBLite consensus disorder prediction 1 15 - -
Trre13g04961 676 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 424 493 IPR036638 GO:0046983
Trre13g04961 676 FunFam Basic helix-loop-helix transcription factor 420 483 - -
Trre13g04961 676 CDD bHLH_AtPIF_like 425 486 IPR047265 -
Trre13g04961 676 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g04961 676 MobiDBLite consensus disorder prediction 41 78 - -
Trre13g04961 676 Gene3D - 421 482 IPR036638 GO:0046983
Trre13g04961 676 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 425 474 IPR011598 GO:0046983
Trre13g04961 676 MobiDBLite consensus disorder prediction 41 61 - -
Trre13g04961 676 Pfam Helix-loop-helix DNA-binding domain 429 475 IPR011598 GO:0046983
Trre13g04961 676 MobiDBLite consensus disorder prediction 648 676 - -
Trre13g04961 676 PANTHER TRANSCRIPTION FACTOR PIF3 1 628 IPR044273 GO:0003700|GO:0006355
Trre13g04961 676 SMART finulus 431 480 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04961 Trre-Chr13 55732499 55735911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04961 14 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.073 1.14e-49 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g04961 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04961 K12126 - gmx:100794974 574.704