Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04959 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTTCGTAAAGGTCTTTGGTCTCCTGAAGAAGATGAAAAGCTTTTGAATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCAAAACTAGCTGGTTTGCAAAGGTGTGGTAAGAGCTGTAGATTGAGGTGGATAAATTATCTTAGACCTGATTTGAAGAGAGGAGCATTTTCACAACAAGAAGAAAATTCCATAATTGAACTTCATGCACTCCTTGGCAACAGATGGTCTCAGATTGCGGCACAGTTACCAGGAAGAACAGATAATGAGATAAAAAATGTATGGAATTCAAGTTTGAAGAAGAAGCTTAGACAAAAAGGAATTGATCCAAACACACACCAACCAATCTGTGAATTAGCTGAGATCAATGACAAGGACAAGCAATTAGTTGCTGATGACAAAAGTAATATTCAGAAAACCTCTGTGGGATCCAATGAAGTGAAGAATCTTTTTGATGACACACCAACACCAAATCCAAATTTTATTCCTATGGATAATAACTGCAATTATCATCCACTTGAAAAATTTTCTTCAACTTCAAAAATCAACAATTGCTTCATACCTTCTTCTGATCATATGGTTGGATTAGGAGGTTCATATAATCTCTCTTTTCAACAACTTAACTATGGAATCAATAACATAGCTCTATCTCCAAATTCCAACAACAACAATAACAATTCACTTTGTTTCATACCAAGTACAAGTTGTTCCAATTCCACTTGTTCTCAAATGATGTCAGAACTCAATTCTTCAACCATGTACCATTCTATGTTCCAAACAGCTCCAAACACAAAACATATAAATCCTTCAAATTCTATATCCTCTGGTGATGTTGATGGGATTCAAAACTGGGAATTCAGTAACAACAATCCAAGCAAAAGCAGCAATGGAAGCATTTGTAGCAACATTAACTTCATTGATCAAGAAAATCATCAAGTTGTAGAAGAGATTAAATGGTCTGAATATCTAAACAGTACTACACCATTTTATCAACAACATCAAAATACAACATTAACAGAGTCTTCTTCAATCATGTACAATGATAATGAGATTAAACAAGAAATGGGATTCATTAATAATAGTCACCATCAGCAACGTTTTGAAGATGCTAATTCAGATATATATAGCAACAAAGATCTTCAGAGATTCTCACTGGCATTTGGACAAACACTTTAG 1215 0.3465 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNVWNSSLKKKLRQKGIDPNTHQPICELAEINDKDKQLVADDKSNIQKTSVGSNEVKNLFDDTPTPNPNFIPMDNNCNYHPLEKFSSTSKINNCFIPSSDHMVGLGGSYNLSFQQLNYGINNIALSPNSNNNNNNSLCFIPSTSCSNSTCSQMMSELNSSTMYHSMFQTAPNTKHINPSNSISSGDVDGIQNWEFSNNNPSKSSNGSICSNINFIDQENHQVVEEIKWSEYLNSTTPFYQQHQNTTLTESSSIMYNDNEIKQEMGFINNSHHQQRFEDANSDIYSNKDLQRFSLAFGQTL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04959 404 CDD SANT 69 112 IPR001005 -
Trre13g04959 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g04959 404 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre13g04959 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre13g04959 404 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Trre13g04959 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre13g04959 404 FunFam MYB transcription factor 68 129 - -
Trre13g04959 404 CDD SANT 17 61 IPR001005 -
Trre13g04959 404 SMART sant 66 114 IPR001005 -
Trre13g04959 404 SMART sant 13 63 IPR001005 -
Trre13g04959 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre13g04959 404 FunFam Myb transcription factor 11 67 - -
Trre13g04959 404 Gene3D - 11 67 - -
Trre13g04959 404 Gene3D - 68 141 - -
Trre13g04959 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g04959 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04959 Trre-Chr13 55714581 55715986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04959 1 404 MYB Transcription Factor Family AT1G09540 45.221 8.73e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g04959 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04959 K09422 - gmx:778182 404.831