Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04926 ATGAACATGAATCTACTTCAGAACCAGAAACGTAGCAACAACATGAACATGACTACTAATCCATTGTTCAGTAGTGATTCATTGGGCTATTATTCTCAATCTCATTGCTACCCTCATGAACAACACAACTATACAATGATGGAGAAGAGACAATTGTTTCTTAGAAGCTATCAATTTAGTAGAAGCAAGACTTTTTCTGAAAGAATCAAAGGCTCTTTTGTTCATGTTCACAAAGTTGCATTGCGATCTGCTAGGAAACTTAGGAGGAGGTTGGAATTTTCTGTTTCCAGAATCAAATGTGGTTTCTATTCCAGAAGCCGTCACAACAAAGGTCAAGCTGAGAGAGAGTTTAAAGTTGAGGTAGAAGTAATTGGTTGTGTGCGACACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAAGGTGCATACAGGATGCTTGTGTATGAATATGTTGATAATGACAATCTGGACCAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGATATCCGGATGAACATTTTATTGGGCACGGCAAAAGGATTGGCTTATCTTCGTGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACCCTAAGGTTTCTGATTTCGGTCTTGCTAAGCTTCTGCATTCTGACCACAGCTATGTCACGACTCGAGTCATGGGGACATTTGGGTTAGTATGA 738 0.4079 MNMNLLQNQKRSNNMNMTTNPLFSSDSLGYYSQSHCYPHEQHNYTMMEKRQLFLRSYQFSRSKTFSERIKGSFVHVHKVALRSARKLRRRLEFSVSRIKCGFYSRSRHNKGQAEREFKVEVEVIGCVRHKNLVRLLGYCVEGAYRMLVYEYVDNDNLDQWLHGDVGPVSPMTWDIRMNILLGTAKGLAYLREGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLHSDHSYVTTRVMGTFGLV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04926 245 SMART serkin_6 63 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04926 245 Pfam Protein kinase domain 107 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04926 245 ProSiteProfiles Protein kinase domain profile. 62 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04926 245 Gene3D Transferase(Phosphotransferase) domain 1 153 245 - -
Trre13g04926 245 SUPERFAMILY Protein kinase-like (PK-like) 71 242 IPR011009 -
Trre13g04926 245 PANTHER OS01G0323000 PROTEIN 108 245 - -
Trre13g04926 245 Gene3D Phosphorylase Kinase; domain 1 70 152 - -
Trre13g04926 245 FunFam Os07g0541700 protein 152 241 - -
Trre13g04926 245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04926 Trre-Chr13 55535744 55540432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04926 59 243 Trihelix Transcription Factor Family AT1G23540 43.784 1.21e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre13g04926 Pkinase 2.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04926 - - gmx:100305432 265.774