Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04912 ATGAATGTACTCACAACAGAACTCAGAGTAGAATCTGCTGTTTGGCAACAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGAGCATGTGGCTATGGAAATCTGAACATAGATGGATATGGTATAAAAACAGCTGCATTGAGTACTGCTCTATTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAAGCAAAGTTCCTCAATGGTGCCACAAGGGGACTTCCATTACTATTACTGCCACAAACTTTTGTCCACCAAACTTCGCACAACCTAGTGACAATGGTGGTTGGTGTAATCCCCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGACTATAGCTATTTACAGAGCTGGAATTGTTCCCATTTTATATAGAAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGATTTTTTTGAGCTAGTTCTTATAAGCAACGTAGGTGGAGGTGGAGAGATATCTAAAGTATGGATCAAAGGGTCAAAAAAGAATAAATGGGAATCAATGTCAATGAATTGGGGTGCTAATTGGCAGAGCCTAAGTTTTCTCAATGGTCAGAGCTTATCCTTTAGAATTCAACTCAAAAATGGAAAGACTCGTACAGCTATAAATGTAGCACCATCCAATTGGAAATTTGGCCAATCTTTCAAAAGTAATGTTCAGTTTTAA 729 0.3937 MNVLTTELRVESAVWQQAHATFYGGSDASGTMGGACGYGNLNIDGYGIKTAALSTALFNDGKSCGGCYQIVCDASKVPQWCHKGTSITITATNFCPPNFAQPSDNGGWCNPPRPHFDMSQPAFETIAIYRAGIVPILYRRVGCKRSGNIRFTINGRDFFELVLISNVGGGGEISKVWIKGSKKNKWESMSMNWGANWQSLSFLNGQSLSFRIQLKNGKTRTAINVAPSNWKFGQSFKSNVQF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04912 242 CDD DPBB_EXPA_N 15 143 - -
Trre13g04912 242 Gene3D - 146 242 IPR036749 -
Trre13g04912 242 SMART dpbb_1 50 138 IPR007112 -
Trre13g04912 242 SUPERFAMILY Barwin-like endoglucanases 11 166 IPR036908 -
Trre13g04912 242 Pfam Lytic transglycolase 50 138 IPR009009 -
Trre13g04912 242 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 87 97 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 45 59 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 14 29 IPR007118 GO:0005576
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Trre13g04912 242 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Trre13g04912 242 SUPERFAMILY PHL pollen allergen 145 238 IPR036749 -
Trre13g04912 242 Gene3D - 4 144 IPR036908 -
Trre13g04912 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 148 IPR007112 -
Trre13g04912 242 FunFam Expansin 5 144 - -
Trre13g04912 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 238 IPR007117 -
Trre13g04912 242 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664
Trre13g04912 242 Pfam Expansin C-terminal domain 149 227 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04912 Trre-Chr13 55431361 55432788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04912 12 242 Expansin Gene Family AT4G01630 81.385 5.83e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04912 - - psat:127132523 481.87