Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04911 ATGGAAAAATTAATTATTAGCTGTGTTCTTATATTGCTAATGAATGTACTCACAACAGAACTCAGAGTAGAATCTGCTGTTTGGCAACAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGAGCATGTGGCTATGGAAATCTGAACATAGATGGATATGGTATAAAAACAGCTGCATTGAGTACTGCTCTATTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAAGCAAAGTTCCTCAATGGTGCCACAAGGGGACTTCCATTACTATTACTGCCACAAACTTTTGTCCACCAAACTTCGCACAACCTAGTGACAATGGTGGTTGGTGTAATCCCCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGACTATAGCTATTTACAGAGCTGGAATTGTTCCCATTTTATATAGAAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGATTTTTTTGAGCTAGTTCTTATAAGCAACGTAGGTGGAGGTGGAGAGATATCTAAAGTATGGATCAAAGGGTCAAAAAAGAATAAATGGGAATCAATGTCAATGAATTGGGGTGCTAATTGGCAGAGCCTAAGTTTTCTCAATGGTCAGAGCTTATCCTTTAGAATTCAACTCAAAAATGGAAAGACTCGTACAGCTATAAATGTAGCACCATCCAATTGGAAATTTGGCCAATCTTTCAAAAGTAATGTTCAGTTTTAA 768 0.3854 MEKLIISCVLILLMNVLTTELRVESAVWQQAHATFYGGSDASGTMGGACGYGNLNIDGYGIKTAALSTALFNDGKSCGGCYQIVCDASKVPQWCHKGTSITITATNFCPPNFAQPSDNGGWCNPPRPHFDMSQPAFETIAIYRAGIVPILYRRVGCKRSGNIRFTINGRDFFELVLISNVGGGGEISKVWIKGSKKNKWESMSMNWGANWQSLSFLNGQSLSFRIQLKNGKTRTAINVAPSNWKFGQSFKSNVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04911 255 Gene3D - 159 255 IPR036749 -
Trre13g04911 255 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Trre13g04911 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Trre13g04911 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Trre13g04911 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Trre13g04911 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Trre13g04911 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Trre13g04911 255 FunFam Expansin 17 157 - -
Trre13g04911 255 Pfam Lytic transglycolase 63 151 IPR009009 -
Trre13g04911 255 SUPERFAMILY Barwin-like endoglucanases 27 179 IPR036908 -
Trre13g04911 255 Gene3D - 15 157 IPR036908 -
Trre13g04911 255 PANTHER EXPANSIN-A15 11 252 IPR002963 GO:0009664
Trre13g04911 255 SMART dpbb_1 63 151 IPR007112 -
Trre13g04911 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Trre13g04911 255 CDD DPBB_EXPA_N 28 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04911 Trre-Chr13 55431361 55432827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04911 1 255 Expansin Gene Family AT4G01630 74.902 8.78e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04911 - - psat:127132523 496.123