Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04910 ATGGCGTCTTCATTCTCAACCCATTTTCTTCAATCTCAAATCCCTCTCCAGGGTAATTTTAGCCAACATGTGTCTATGGTTCCAAAGTCACATACTATATCACGGATTGGTTACACTAAATCACTGTCATTAAGATCAAATTTTGCTTTGAAGTTTCCAGCCACGCAACAATCTGGAGTAAGATCAATTACACACAGGAGAGTCACATGTGCTGCTGCTGCTGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGATGTAGAAATTGGGGGTAAACCTGTTGGCAGGATTGTTTTGGGTTTGTTCGGAGAGGTTGCTCCTAAAACAGTTGATAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACCAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGCTTCAAGGAGGTGACTTCACTGCAGGAGATGGAACCGGTGGAAAAAGTATCTATGGTTCTAATTTTGAAGATGAGACTTTTGCCTTGAAACATGTTGGTCCTGGAGTTTTGAGTATGGCAAATGCTGGTCCTAATACTAATGGTAGTCAATTTTTTATTTGCACTATAAAGACTCCATGGCTAGACAATCGACATGTTGTGTTTGGACATGTGATTGATGGAATGGATGTTGTGAGGACACTTGAATCTCAGGAAACAAGCAGATTAGATATCCCTAAAAAGCCTTGTAGAATTGTTAAGTGCGGAGAACTGCCTTTAGATGATTGA 756 0.4021 MASSFSTHFLQSQIPLQGNFSQHVSMVPKSHTISRIGYTKSLSLRSNFALKFPATQQSGVRSITHRRVTCAAAAENVQELQAKVTTKCFFDVEIGGKPVGRIVLGLFGEVAPKTVDNFRALCTGEKGYGYQGCSFHRIIKEFMLQGGDFTAGDGTGGKSIYGSNFEDETFALKHVGPGVLSMANAGPNTNGSQFFICTIKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIVKCGELPLDD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04910 251 Gene3D - 71 250 IPR029000 -
Trre13g04910 251 FunFam Peptidyl-prolyl cis-trans isomerase 73 251 - -
Trre13g04910 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 87 247 - -
Trre13g04910 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 89 246 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 90 245 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 SUPERFAMILY Cyclophilin-like 83 247 IPR029000 -
Trre13g04910 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 221 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 205 IPR002130 GO:0000413|GO:0003755
Trre13g04910 251 CDD cyclophilin_ABH_like 87 245 - -
Trre13g04910 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 130 147 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04910 Trre-Chr13 55427388 55429609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04910 100 244 U-box Gene Family AT5G67530 43.151 1.75e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04910 K03768 - gmx:100785805 381.333