Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04909 ATGAAGCTAATTCTCATAATAACGTTTTCTCTTATTATCTCAGTTATTAGATCTGAGACTCACACACACTATCTCTCTCCTAAGTATATCTTGGAAAACGATGTCGTTTCACTTCCAGATGCAGCAGCAGCAGCAGCAGCAGCTCCACAACCTCTCATGGTGCCACTCACTCTTATTCATGGAGCTGATTCTAAAGGAGCAGTATGTTTGGATGGAACATTACCTGGTTACCACTTTCATCCCGGATCTGGATCGGGTGCAAATAGTTGGCTCATTCAATTAGAGGGAGGAGGATGGTGTAACACCATCAGAAGTTGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAATCACATGGAAAAGCAACTACCATTCACAGGGATACTGAGCAATAAAGCTGAAGAAAATCCTGATTTCTTTAACTGGAACAGAATCAAAGTGCGCTACTGCGATGGGGCATCTTTCAGTGGAGACAGTCAAAATGAGGCTGCACAACTTCAATTTAGAGGACAAAAAATATGGTTAGCTGCAATGGAAGAACTATTGTCCAAGGGAATGAAGAATGCCAATCAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTCTGGCATCTATACTACATTGTGACGAGTTCCGTAGCTTGCTTCCAAAATCTACCAAAGTGAAGTGTTTAAGTGATGCGGGATTTTTTCTTGATGCAACTGATGTTTCTGGCGGGCACACATTGAGGAATCTGTTTGGAGGTGTAGTTAACTTACAGGAAGTGCAAAAAAATCTGCCAAAAAGTTGTCTCAACAACCTTGACCCAGTTTCGTGCTTCTTTCCTCAAAATTTGATCAATCATGTTCAGACTCCACTGTTTCTGCTGAATGCAGCTTATGATGCATGGCAGCTACAAGAAAGTTTAGCCCCGCCTTCAGCAGATCCTCATGGCTCTTGGAATAATTGTAAATCAAATCATGCAAATTGCAACTCAGCCCAAATTCAGACCCTTCAAAACTTCAGAAATCAAATGCTAAATTACATGAAAGGATTCTCAACGACATCACAATCTGGATTATTCATAAATTCTTGTTTTGCACATTGCCAATCGGAGAGACAAGACACATGGTTTGCTGATGACTCTCCACTCCTTAACAACATGCCAATTGCTATTGCCGTTGGAAATTGGTTTTTCGATCGTCAAGTTGTCAAAGCTATTGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATGTTGGTAGATCTTCTGTGGTGGACTCTCAGTCCACAAGTGATGATATTCCTACCAACATACTATATTCGCGCTCGACAAAGTTGACGTTTAGTGCTGGCTTACTTGTACTAAGTGCTTTATTGCCAATTACATGCTCCTAA 1392 0.4159 MKLILIITFSLIISVIRSETHTHYLSPKYILENDVVSLPDAAAAAAAAPQPLMVPLTLIHGADSKGAVCLDGTLPGYHFHPGSGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSNHMEKQLPFTGILSNKAEENPDFFNWNRIKVRYCDGASFSGDSQNEAAQLQFRGQKIWLAAMEELLSKGMKNANQALLSGCSAGGLASILHCDEFRSLLPKSTKVKCLSDAGFFLDATDVSGGHTLRNLFGGVVNLQEVQKNLPKSCLNNLDPVSCFFPQNLINHVQTPLFLLNAAYDAWQLQESLAPPSADPHGSWNNCKSNHANCNSAQIQTLQNFRNQMLNYMKGFSTTSQSGLFINSCFAHCQSERQDTWFADDSPLLNNMPIAIAVGNWFFDRQVVKAIDCAYPCDNTCHNLVFNVGRSSVVDSQSTSDDIPTNILYSRSTKLTFSAGLLVLSALLPITCS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04909 463 PANTHER NOTUM-RELATED 52 413 IPR004963 GO:0016787
Trre13g04909 463 Pfam Pectinacetylesterase 49 397 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04909 Trre-Chr13 55421132 55425958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04909 33 417 Carbohydrate Esterase AT2G46930 69.870 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04909 K19882 - gmx:100785270 756.903