Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04908 ATGAAAATGAAGCTAATTCTCATAATAACGTTTTCTCTTATTATCTCAGTTATTAGATCTGAGACTCACACACACTATCTCTCTCCTAAGTATATCTTGGAAAACGATGTCGTTTCACTTCCAGATGCAGCAGCAGCAGCAGCAGCAGCTCCACAACCTCTCATGGTGCCACTCACTCTTATTCATGGAGCTGATTCTAAAGGAGCAGTATGTTTGGATGGAACATTACCTGGTTACCACTTTCATCCCGGATCTGGATCGGGTGCAAATAGTTGGCTCATTCAATTAGAGGGAGGAGGATGGTGTAACACCATCAGAAGTTGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAATCACATGGAAAAGCAACTACCATTCACAGGGATACTGAGCAATAAAGCTGAAGAAAATCCTGATTTCTTTAACTGGAACAGAATCAAAGTGCGCTACTGCGATGGGGCATCTTTCAGTGGAGACAGTCAAAATGAGGCTGCACAACTTCAATTTAGAGGACAAAAAATATGGTTAGCTGCAATGGAAGAACTATTGTCCAAGGGAATGAAGAATGCCAATCAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTCTGGCATCTATACTACATTGTGACGAGTTCCGTAGCTTGCTTCCAAAATCTACCAAAGTGAAGTGTTTAAGTGATGCGGGATTTTTTCTTGATGCAACTGATGTTTCTGGCGGGCACACATTGAGGAATCTGTTTGGAGGTGTAGTTAACTTACAGGAAGTGCAAAAAAATCTGCCAAAAAGTTGTCTCAACAACCTTGACCCAGTTTCGTGCTTCTTTCCTCAAAATTTGATCAATCATGTTCAGACTCCACTGTTTCTGCTGAATGCAGCTTATGATGCATGGCAGCTACAAGAAAGTTTAGCCCCGCCTTCAGCAGATCCTCATGGCTCTTGGAATAATTGTAAATCAAATCATGCAAATTGCAACTCAGCCCAAATTCAGACCCTTCAAAACTTCAGAAATCAAATGCTAAATTACATGAAAGGATTCTCAACGACATCACAATCTGGATTATTCATAAATTCTTGTTTTGCACATTGCCAATCGGAGAGACAAGACACATGGTTTGCTGATGACTCTCCACTCCTTAACAACATGCCAATTGCTATTGCCGTTGGAAATTGGTTTTTCGATCGTCAAGTTGTCAAAGCTATTGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATGTTGGTAGATCTTCTGTGGTGGACTCTCAGTCCACAAGTGATGATATTCCTACCAACATACTATATTCGCGCTCGACAAAGTTGACGTTTAGTGCTGGCTTACTTGTACTAAGTGCTTTATTGCCAATTACATGCTCCTAA 1398 0.4149 MKMKLILIITFSLIISVIRSETHTHYLSPKYILENDVVSLPDAAAAAAAAPQPLMVPLTLIHGADSKGAVCLDGTLPGYHFHPGSGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSNHMEKQLPFTGILSNKAEENPDFFNWNRIKVRYCDGASFSGDSQNEAAQLQFRGQKIWLAAMEELLSKGMKNANQALLSGCSAGGLASILHCDEFRSLLPKSTKVKCLSDAGFFLDATDVSGGHTLRNLFGGVVNLQEVQKNLPKSCLNNLDPVSCFFPQNLINHVQTPLFLLNAAYDAWQLQESLAPPSADPHGSWNNCKSNHANCNSAQIQTLQNFRNQMLNYMKGFSTTSQSGLFINSCFAHCQSERQDTWFADDSPLLNNMPIAIAVGNWFFDRQVVKAIDCAYPCDNTCHNLVFNVGRSSVVDSQSTSDDIPTNILYSRSTKLTFSAGLLVLSALLPITCS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04908 465 Pfam Pectinacetylesterase 51 399 IPR004963 GO:0016787
Trre13g04908 465 PANTHER NOTUM-RELATED 46 415 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04908 Trre-Chr13 55421132 55425964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04908 35 419 Carbohydrate Esterase AT2G46930 69.870 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04908 K19882 - gmx:100785270 758.059