Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04905 ATGGGAAGACACTCTTGTTGTTTCAAACAAAAGCTTAGGAAAGGTCTATGGTCACCTGAAGAAGATGAAAAACTTTTGAATCATATTACTAAATATGGTCATGGATGTTGGAGTTCTGTTCCTAAACAAGCAGGTCTTCAAAGGTGTGGTAAGAGTTGTAGGCTTAGGTGGATTAATTACTTAAGACCTGATTTAAAAAGAGGTACATTTTCACAAGAAGAAGAAAATATTATCATTGAACTTCATTCAGTACTAGGAAATAGATGGTCTCAAATTGCAGCACAATTACCTGGAAGGACTGATAATGAAATAAAGAATCTTTGGAATTCTTGTTTAAAGAAGAAACTGAGACAAAAGGGTATAGATCCTGTGACTCATAAACCACTTTCTGAGGTTGAAAATGTTGAACATGAAGATGAAAAAACCAAAAGTCAAGAAAAAGTAACAGAAATATCAGAATCAGATGAATTGAATCTTCTGAGATCAGAAAGTACTTCAAAGTCAGATACATGTTCCTATGAACAAAAACAATCTTCAATTGTTCTAAAAGCTTATGCAACTGAAATGGAAGTGGAAGGTTCTTGTTCTAACTATTTGATGGGAAATTACCCTTTTGTTAATAATGATAATCTTCAAAATTCAAACTCTTCTCATTGGTTTAACCAAACAGGATCAAAACCTTTTGACATGAATTCTGAATTTATGTCTAATACTTTTTGTTACAAAACATCTTTTGATGTTCCTTCAGAAGATGTTTCTATGTCTTCATCTTCTTTTCCTATGAAGAACAGTATCTTATCTTCTTGGGGATTGACAGATTGTGACAGTTCTACTAAAGAGAATCAAACTCATATTCATATGATGGAGAATCAGACAGAAGAAGAAGAAGAAGCTAAGTGGAATGAGTATCTTCAAAATCCAATGTTAATGCTACAAAATCAAGTACCTCATGAGTCTTTATGCAATGAGATAAAGCCTGCCACAAATTTGTCTCCTGATGCTTTAGGTGACATGTTGCCACATTCAAAGCAGCAAGAATCTTCTCAATCTTATAATATACCAACTTTTGGACATGTATAG 1080 0.3315 MGRHSCCFKQKLRKGLWSPEEDEKLLNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENIIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENVEHEDEKTKSQEKVTEISESDELNLLRSESTSKSDTCSYEQKQSSIVLKAYATEMEVEGSCSNYLMGNYPFVNNDNLQNSNSSHWFNQTGSKPFDMNSEFMSNTFCYKTSFDVPSEDVSMSSSSFPMKNSILSSWGLTDCDSSTKENQTHIHMMENQTEEEEEAKWNEYLQNPMLMLQNQVPHESLCNEIKPATNLSPDALGDMLPHSKQQESSQSYNIPTFGHV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04905 359 MobiDBLite consensus disorder prediction 332 359 - -
Trre13g04905 359 MobiDBLite consensus disorder prediction 132 162 - -
Trre13g04905 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g04905 359 Gene3D - 11 67 - -
Trre13g04905 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g04905 359 FunFam MYB transcription factor 68 141 - -
Trre13g04905 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre13g04905 359 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre13g04905 359 FunFam Myb transcription factor 11 67 - -
Trre13g04905 359 CDD SANT 17 61 IPR001005 -
Trre13g04905 359 Gene3D - 69 151 - -
Trre13g04905 359 MobiDBLite consensus disorder prediction 132 163 - -
Trre13g04905 359 PANTHER MYB DOMAIN PROTEIN 55 1 291 - -
Trre13g04905 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre13g04905 359 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre13g04905 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g04905 359 CDD SANT 69 109 IPR001005 -
Trre13g04905 359 SMART sant 66 114 IPR001005 -
Trre13g04905 359 SMART sant 13 63 IPR001005 -
Trre13g04905 359 MobiDBLite consensus disorder prediction 341 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04905 Trre-Chr13 55391917 55393174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04905 1 155 MYB Transcription Factor Family AT4G01680 82.803 5.35e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g04905 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04905 K09422 - gmx:100782199 416.001