Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04903 ATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGTGCTAGCCATAACAGTGTCTTTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGAATCTTCTTCTGTATGCTCACTTGAAGCCTCAAATGATATTCCAAACTATGGTCTCAGAAAATTACATGAGGAAACTGATGACTCACCATATTTCAGTGATAGTGAAGAAGAAAAACAAGAAAATATGATAAAAGGAAAGCTAGCTCGTGAAGGAAACAGAGTCAAGAGAAGCTACAGGAATGCCAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGATAAAATCAACGAAAAAATACGTATATTGAGAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGATGATGCCATTGACTATCTTAAGAACCTCAAACTTCAGTTACATATTATGTCAATGAGTAGAGGACTTTGCATGCCATTTAATCATCTTATGATGTTACAAACACATCATATGAATATGAATGCACAACATTTAATGGGTTTGAGGCCACCACAAGTACAGTTTCCTATTCCACAACAGAGTAATGGTGGTGTCACAGAAAACAACAACAGAGTTCAGATGTTTGGTTTCTCCAATCAATTTCCAGCATCACCTTTCATGCCTCCTATTATTGGAAACTCTTCAACTACACCATCACCAACCTGTTATGGTGACATCCAGAATCAACCTGGCAGGACATGTGGTTAA 744 0.3683 MELLPTVDEHSEAASASHNSVFDIRQKRKASAIESSSVCSLEASNDIPNYGLRKLHEETDDSPYFSDSEEEKQENMIKGKLAREGNRVKRSYRNAKVHNLSERKRRDKINEKIRILRELIPNCNKMDKASMLDDAIDYLKNLKLQLHIMSMSRGLCMPFNHLMMLQTHHMNMNAQHLMGLRPPQVQFPIPQQSNGGVTENNNRVQMFGFSNQFPASPFMPPIIGNSSTTPSPTCYGDIQNQPGRTCG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04903 247 CDD bHLH_AtPIF_like 93 155 IPR047265 -
Trre13g04903 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 171 IPR036638 GO:0046983
Trre13g04903 247 MobiDBLite consensus disorder prediction 228 247 - -
Trre13g04903 247 Gene3D - 89 151 IPR036638 GO:0046983
Trre13g04903 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Trre13g04903 247 PANTHER TRANSCRIPTION FACTOR PIF3 15 228 IPR044273 GO:0003700|GO:0006355
Trre13g04903 247 SMART finulus 99 148 IPR011598 GO:0046983
Trre13g04903 247 Pfam Helix-loop-helix DNA-binding domain 97 142 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04903 Trre-Chr13 55382251 55383554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04903 28 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 48.921 1.59e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g04903 HLH 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04903 K12126 - gmx:100818543 188.734