Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04902 ATGTTTGATTCTAGTTCTTCTCATATTGATTTTCAATCCTCCCAAAGCAAGAATAGTACTCACATGTTCACATATTTAACACCATTAAAGAAACCAAGAATGGAAATTTCAAGCCAAATAGAAACAACAAAGTCACAAAAACAATACATGGTGGGGTGTGAATATCAAAAAACAGGAAAAGTGAATTTCTCAAATTTTTCTGTACCTGCAGTGTTTCTCAAATCAACTCATCAACAAAATAGTTCAAGAAATGATGTTTCTTCTACAAAATTTCAAGAACAAAATCCTAACAAATCAAGTATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGTGCTAGCCATAACAGTGTCTTTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGAATCTTCTTCTGTATGCTCACTTGAAGCCTCAAATGATATTCCAAACTATGGTCTCAGAAAATTACATGAGGAAACTGATGACTCACCATATTTCAGTGATAGTGAAGAAGAAAAACAAGAAAATATGATAAAAGGAAAGCTAGCTCGTGAAGGAAACAGAGTCAAGAGAAGCTACAGGAATGCCAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGATAAAATCAACGAAAAAATACGTATATTGAGAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGATGATGCCATTGACTATCTTAAGAACCTCAAACTTCAGTTACATATTATGTCAATGAGTAGAGGACTTTGCATGCCATTTAATCATCTTATGATGTTACAAACACATCATATGAATATGAATGCACAACATTTAATGGGTTTGAGGCCACCACAAGTACAGTTTCCTATTCCACAACAGAGTAATGGTGGTGTCACAGAAAACAACAACAGAGTTCAGATGTTTGGTTTCTCCAATCAATTTCCAGCATCACCTTTCATGCCTCCTATTATTGGAAACTCTTCAACTACACCATCACCAACCTGTTATGGTGACATCCAGAATCAACCTGGCAGGACATGTGGTTAA 1044 0.3506 MFDSSSSHIDFQSSQSKNSTHMFTYLTPLKKPRMEISSQIETTKSQKQYMVGCEYQKTGKVNFSNFSVPAVFLKSTHQQNSSRNDVSSTKFQEQNPNKSSMELLPTVDEHSEAASASHNSVFDIRQKRKASAIESSSVCSLEASNDIPNYGLRKLHEETDDSPYFSDSEEEKQENMIKGKLAREGNRVKRSYRNAKVHNLSERKRRDKINEKIRILRELIPNCNKMDKASMLDDAIDYLKNLKLQLHIMSMSRGLCMPFNHLMMLQTHHMNMNAQHLMGLRPPQVQFPIPQQSNGGVTENNNRVQMFGFSNQFPASPFMPPIIGNSSTTPSPTCYGDIQNQPGRTCG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04902 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 271 IPR036638 GO:0046983
Trre13g04902 347 CDD bHLH_AtPIF_like 193 255 IPR047265 -
Trre13g04902 347 SMART finulus 199 248 IPR011598 GO:0046983
Trre13g04902 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Trre13g04902 347 MobiDBLite consensus disorder prediction 328 347 - -
Trre13g04902 347 Gene3D - 189 251 IPR036638 GO:0046983
Trre13g04902 347 PANTHER TRANSCRIPTION FACTOR PIF3 13 328 IPR044273 GO:0003700|GO:0006355
Trre13g04902 347 Pfam Helix-loop-helix DNA-binding domain 197 242 IPR011598 GO:0046983
Trre13g04902 347 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04902 Trre-Chr13 55381951 55383554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04902 61 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 40.183 7.92e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g04902 HLH 4.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04902 K12126 - gmx:100804665 209.534