Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04899 ATGGGCAAAACCAAAAGTTCAAATTCTTCTTCATCTATTAGCAGCAACACCAATCACAATCTTTTTATTTCAACTGCATCTTCTTTCAACACACATCAACTTCCCACAGATCTTAGTCTTGGACTCACCATTTCCTCCACTAAACAATTTCATAATAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTAAAAACTCTTGAACACATGTTTGACACTACTATTCTATGGGGAAATGAGATGGATGAAGTGCAACCAGAGAGATGCCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTCATGGTTGGTGATGTTCCTTGGGAGATGTTTTTATCTACCGTTAAGAGGTTGAAGATCACAAGGGTAGACACATTTGGGTGTTAG 441 0.3741 MGKTKSSNSSSSISSNTNHNLFISTASSFNTHQLPTDLSLGLTISSTKQFHNSFFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04899 146 ProSiteProfiles PB1 domain profile. 53 143 IPR000270 GO:0005515
Trre13g04899 146 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 141 IPR003311 GO:0005634|GO:0006355
Trre13g04899 146 Pfam AUX/IAA family 48 140 IPR033389 -
Trre13g04899 146 Gene3D - 48 145 - -
Trre13g04899 146 SUPERFAMILY CAD & PB1 domains 49 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04899 Trre-Chr13 55359270 55359927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04899 57 138 B3 DNA Binding Superfamily AT4G23980 35.366 7.53e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre13g04899 AUX_IAA 1.5e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04899 K14484 - gmx:100783140 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04899 13 55359270 55359927 Trre1g04355 1 49343587 49344614 PCT