Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04897 ATGGTTGTAGGATGCCCGGTTCGCAAGCAGGTGCAAAGATGCGCAGAGGACAAGACAGTGTTAATAACAACATGCGAAGGGAACCACAACCATCCACTTCCACCAGCTGCAACTGCCATAGCAAACATAACATCAGCAGCTGCAGCAATGCTACTGTCAAATTCAACCTCATCATCAACAACATTTCCCTATGCTACAACATTCTCACTTTCTCAACCATTCCCAACCATCACCCTCGATTTGACACAAAACAGACTTCCTCTGCCATTGCAAATGCAACATCAGCAGCAGCTAACAACTATGACTTTGCCGTTACTTCAACTAGGAGGACAGCGACCGCCTTCTACTATGATTGAGAGTGTGAGTGCAGCCATTTCTTCGGATCCAAGCTTCACTGCGGCTTTGGCAGAGATGATTTCGTCAATTATTGGAGCAAAGAAAGGTGGTGATGATGGTAATAATAACAATGCAAGTGATGTTGAGATTTGTGATACCACTAGCCTGATACTACTAGCCTCTACAAAACATTTATAG 534 0.4438 MVVGCPVRKQVQRCAEDKTVLITTCEGNHNHPLPPAATAIANITSAAAAMLLSNSTSSSTTFPYATTFSLSQPFPTITLDLTQNRLPLPLQMQHQQQLTTMTLPLLQLGGQRPPSTMIESVSAAISSDPSFTAALAEMISSIIGAKKGGDDGNNNNASDVEICDTTSLILLASTKHL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04897 177 Gene3D WRKY domain 2 35 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04897 177 ProSiteProfiles WRKY domain profile. 1 34 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04897 177 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 156 IPR044810 GO:0003700
Trre13g04897 177 Pfam WRKY DNA -binding domain 4 32 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04897 177 SMART WRKY_cls 2 33 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04897 177 SUPERFAMILY WRKY DNA-binding domain 3 34 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04897 Trre-Chr13 55347909 55348551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04897 1 143 WRKY Transcription Factor Family AT4G04450 47.027 1.25e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g04897 WRKY 3.8e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04897 - - psat:127132551 152.525