Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04890 ATGTCTGTGATTAGAACAAAAAGAGACTTGGTTAAATCTGCCAAGGAGACTCCATGTACCATGCTAGATTTATCAGTAATCGATCAATTACCTGTTCTAAGATGCAATGTTAAAACCTTGCATGTGTATAGACATGGCCCTGAAGCACCAAGGGTCATAAGAGAGGCATTGTCGCTAGCACTCGTTCCATACTACCCTCTTGCAGGACGAGTCAAAGAGTCCAAACCTTCGTGCCTCCAAATCGAATGCACAGGTGACGGTGTGTGGTATGTTGAGGCATCAACTGATTACAAACTTGACTCTGTCAATTTCTTTGATGACATGGAGTCAATTCCGTATGGTAATCTTCTTCCCGATGATGTTCACGAGATCAAACACATTGATCCCCTTGTTCAAATGCAGGTGACACAATTTGGTTGTGGGGGTTTTGTGATAGGTCTAGTGTTCAGCCATACCATATGTGATGGCCTTGGTGCTGCACAATTTCTAAATGCAATTGGGGAGCTAGCTAGAGGACTTGACAAACCCACCATCAAACCAGTGTGGAATAGGAACTTCTTTCCCTCTCCTCAAGCACCTTCTTCACTGCCAAAACTATCTATTACAGGTCCACCTCAAATGCCACACTACAATCTAGAGCATTCTAACATAGACATACCTATGGATCAAATCAACCAGATGAAGAAACAGTTCCAGCAAGTAACTGGACAAAGTTGTTCTACCTTCGAAATTGTTGCTGCATTGTTTTGGAGCAGCAGAACAAGAGCCGTAGATTTTGATCCCACCACCCAAGTGAAGCTTGTGTTCTTTGCAAATTGTCGACACCTCATAAACCCTCCTCTACCCAAGGGTTTCTACGGAAACTGTTTCTTCCCGGTGACAACTACAGCTTCATGCGAGTCACTTAGAAAGGCACCAAATATCTTTGAAGTGGTGAAGCTTATCCAAGAAGCAAAGGCCAGGTTACCTTTGGAATTTGTCAAGTACTTGAAGGGTGAACATATAACAGGTGGTGATGAGATTGAGGAGGATCCGTTTGCACCTACACCAAATTACGCCACACTCTTTATGTCTGAGTGGGGGAGGTTGGGATTTGACAATGTAGACTATCAGTGGGGTCCACCTGTCCATGTGGTCCCCATTCAAGGGTCTAGCATTGTACCAGCTGGCATTATGCGCTCGCTGCCTCTCCCGGACAGAGGAATTCGTTTGGTTACATGGTGCGTGGAGGAGGCACATCGCCTTCCCTTCATTGATCAAATACATGGTCTTATAAAGCAACAACTGTTATAA 1293 0.4447 MSVIRTKRDLVKSAKETPCTMLDLSVIDQLPVLRCNVKTLHVYRHGPEAPRVIREALSLALVPYYPLAGRVKESKPSCLQIECTGDGVWYVEASTDYKLDSVNFFDDMESIPYGNLLPDDVHEIKHIDPLVQMQVTQFGCGGFVIGLVFSHTICDGLGAAQFLNAIGELARGLDKPTIKPVWNRNFFPSPQAPSSLPKLSITGPPQMPHYNLEHSNIDIPMDQINQMKKQFQQVTGQSCSTFEIVAALFWSSRTRAVDFDPTTQVKLVFFANCRHLINPPLPKGFYGNCFFPVTTTASCESLRKAPNIFEVVKLIQEAKARLPLEFVKYLKGEHITGGDEIEEDPFAPTPNYATLFMSEWGRLGFDNVDYQWGPPVHVVPIQGSSIVPAGIMRSLPLPDRGIRLVTWCVEEAHRLPFIDQIHGLIKQQLL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04890 430 PANTHER ACYL TRANSFERASE 4 2 422 - -
Trre13g04890 430 Gene3D - 201 417 IPR023213 -
Trre13g04890 430 Pfam Transferase family 2 382 - -
Trre13g04890 430 Gene3D - 1 199 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04890 Trre-Chr13 55314124 55315617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04890 10 387 Monolignol Biosynthesis Gene Families AT5G48930 29.136 2.07e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04890 - - mtr:11426631 724.546