Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04889 ATGACAATGTCTGTGATTAGAACAAAAAGAGACTTGGTTAAATCTGCCAAGGAGACTCCATGTACCATGCTAGATTTATCAGTAATCGATCAATTACCTGTTCTAAGATGCAATGTTAAAACCTTGCATGTGTATAGACATGGCCCTGAAGCACCAAGGGTCATAAGAGAGGCATTGTCGCTAGCACTCGTTCCATACTACCCTCTTGCAGGACGAGTCAAAGAGTCCAAACCTTCGTGCCTCCAAATCGAATGCACAGGTGACGGTGTGTGGTATGTTGAGGCATCAACTGATTACAAACTTGACTCTGTCAATTTCTTTGATGACATGGAGTCAATTCCGTATGGTAATCTTCTTCCCGATGATGTTCACGAGATCAAACACATTGATCCCCTTGTTCAAATGCAGGTGACACAATTTGGTTGTGGGGGTTTTGTGATAGGTCTAGTGTTCAGCCATACCATATGTGATGGCCTTGGTGCTGCACAATTTCTAAATGCAATTGGGGAGCTAGCTAGAGGACTTGACAAACCCACCATCAAACCAGTGTGGAATAGGAACTTCTTTCCCTCTCCTCAAGCACCTTCTTCACTGCCAAAACTATCTATTACAGGTCCACCTCAAATGCCACACTACAATCTAGAGCATTCTAACATAGACATACCTATGGATCAAATCAACCAGATGAAGAAACAGTTCCAGCAAGTAACTGGACAAAGTTGTTCTACCTTCGAAATTGTTGCTGCATTGTTTTGGAGCAGCAGAACAAGAGCCGTAGATTTTGATCCCACCACCCAAGTGAAGCTTGTGTTCTTTGCAAATTGTCGACACCTCATAAACCCTCCTCTACCCAAGGGTTTCTACGGAAACTGTTTCTTCCCGGTGACAACTACAGCTTCATGCGAGTCACTTAGAAAGGCACCAAATATCTTTGAAGTGGTGAAGCTTATCCAAGAAGCAAAGGCCAGGTTACCTTTGGAATTTGTCAAGTACTTGAAGGGTGAACATATAACAGGTGGTGATGAGATTGAGGAGGATCCGTTTGCACCTACACCAAATTACGCCACACTCTTTATGTCTGAGTGGGGGAGGTTGGGATTTGACAATGTAGACTATCAGTGGGGTCCACCTGTCCATGTGGTCCCCATTCAAGGGTCTAGCATTGTACCAGCTGGCATTATGCGCTCGCTGCCTCTCCCGGACAGAGGAATTCGTTTGGTTACATGGTGCGTGGAGGAGGCACATCGCCTTCCCTTCATTGATCAAATACATGGTCTTATAAAGCAACAACTGTTATAA 1299 0.4442 MTMSVIRTKRDLVKSAKETPCTMLDLSVIDQLPVLRCNVKTLHVYRHGPEAPRVIREALSLALVPYYPLAGRVKESKPSCLQIECTGDGVWYVEASTDYKLDSVNFFDDMESIPYGNLLPDDVHEIKHIDPLVQMQVTQFGCGGFVIGLVFSHTICDGLGAAQFLNAIGELARGLDKPTIKPVWNRNFFPSPQAPSSLPKLSITGPPQMPHYNLEHSNIDIPMDQINQMKKQFQQVTGQSCSTFEIVAALFWSSRTRAVDFDPTTQVKLVFFANCRHLINPPLPKGFYGNCFFPVTTTASCESLRKAPNIFEVVKLIQEAKARLPLEFVKYLKGEHITGGDEIEEDPFAPTPNYATLFMSEWGRLGFDNVDYQWGPPVHVVPIQGSSIVPAGIMRSLPLPDRGIRLVTWCVEEAHRLPFIDQIHGLIKQQLL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04889 432 Gene3D - 203 419 IPR023213 -
Trre13g04889 432 Gene3D - 1 201 IPR023213 -
Trre13g04889 432 PANTHER ACYL TRANSFERASE 4 3 424 - -
Trre13g04889 432 Pfam Transferase family 4 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04889 Trre-Chr13 55314118 55315617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04889 12 389 Monolignol Biosynthesis Gene Families AT5G48930 29.136 2.20e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04889 - - mtr:11426631 726.472