Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04888 ATGGAAAACCATTCACCCTTCACTTCTTCCAAATCCTTCAACGACTTCACCACCTTACAACCACCACCACCACCACCATCATCATCATCATCAGAAATTCAATCCTGCAACATCACTCCTCCACAACAAGAACAACAACAACAACCATTTTCAGTTTCACCTCCTAAACATAAAAAACTCAGCCGCTGTAAAACAGCACCAGCCATGTTCATTCTTTCAAACCTTAAACCACAAAACAACAACAACCAACCTCAACTTCCAAAACCACAAACAAATTCCATTATCCGACAAGGCATTTGGCTTCTCTTAATTTATCTTTCTATCGGTGTCACTATTTACTCTTTCAACACAAAAAAATTCTCTGGCATTGAAACTCACCCTGTTGTTGATGCACTTTATTTTTGTATAGTTACCATGTGTACAATTGGTTATGGAGACATAGCTCCATTAACCCCTTTTACTAAAGTTTTTGCTTGTGTTTTTGTTTTGGTTGGTTTTGGATTCATAGATATACTCTTAAGTGGACTTGTTAATTTTGTTTTGGATTTACAAGAAAACTTGATTTTAACTGGTGTTCAAATGGGTGCTAGGGAAGGTTTTTCTGCTAGGGATTATATTGTTGATGTTGCAAAAGGTAGAATGAGGATTAGATTGAAGGTTGGTTTGGCTCTTGGTGTTGTGGTTTTGTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTTGAGGGTTTGAATTGGGTTGATTCCATTTATTTAGCGGTTATGTCTGTTACAACCGTTGGTTACGGAGATCAAGCGTTTAAGACGCTTCCGGGGAGATTGTTTGCTGCAATTTGGTTGTTGTTTTCTACTTTGATGGTTGCTAGGGCTTTTCTTTATTTGGCTGAGGCTAGAATTGATAGAAGACATAGGAGATTGGCTAAGAAGGTTTTGCATAGAGAAATTACTATTGAAGATTGGCTTGCTGCCGATATCAACAATACCGGTTTTATCAGTAAGTCAGAATATGTGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGATAAAGATGTAATGGAAATTTGTAATCAATTCAGGAGGCTTGATCCTTCTAACTGTGGGCATATAACATTACCTCATCTCTTGGAGGGTAGGTCATGA 1143 0.3771 MENHSPFTSSKSFNDFTTLQPPPPPPSSSSSEIQSCNITPPQQEQQQQPFSVSPPKHKKLSRCKTAPAMFILSNLKPQNNNNQPQLPKPQTNSIIRQGIWLLLIYLSIGVTIYSFNTKKFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKVFACVFVLVGFGFIDILLSGLVNFVLDLQENLILTGVQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEGLNWVDSIYLAVMSVTTVGYGDQAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKKVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMEICNQFRRLDPSNCGHITLPHLLEGRS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04888 380 MobiDBLite consensus disorder prediction 1 58 - -
Trre13g04888 380 Pfam Ion channel 227 296 IPR013099 -
Trre13g04888 380 Pfam Ion channel 101 180 IPR013099 -
Trre13g04888 380 MobiDBLite consensus disorder prediction 30 54 - -
Trre13g04888 380 MobiDBLite consensus disorder prediction 1 17 - -
Trre13g04888 380 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 128 354 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre13g04888 380 SUPERFAMILY EF-hand 320 375 IPR011992 -
Trre13g04888 380 PRINTS Two pore domain K+ channel signature 137 165 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre13g04888 380 PRINTS Two pore domain K+ channel signature 258 267 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre13g04888 380 FunFam Two-pore potassium channel 3 203 317 - -
Trre13g04888 380 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Trre13g04888 380 SUPERFAMILY Voltage-gated potassium channels 94 180 - -
Trre13g04888 380 SUPERFAMILY Voltage-gated potassium channels 210 318 - -
Trre13g04888 380 Gene3D - 81 189 - -
Trre13g04888 380 Gene3D - 204 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04888 Trre-Chr13 55306036 55308302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04888 19 376 Ion Channels AT4G01840 57.935 1.53e-151 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04888 K05389 - gmx:100801488 555.829