Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04884 ATGTCAGGGAAGATAATTATATCAGTTGTTTCTCTTATCCTCGTTGTAGGTGTTGCCATTGGTGTTGTTGTAGCTGTTCACAAAAATGGTGAAGATCCTGAGATTCAAACTCAACAAAGATATCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTCTGTCATGAAACTCTTAACAATGTCCGTGGCGCCGACGCTGCAGATCCTAAGGCATACGTAGCGGCTGCTGTGAAAGCAGCCACTGACACTGTCATTAGGGCATTTAACATGAGTGATAGACTCACCGTTGAGTACGGCGACAAGGATAGCGGCATCAAGATGGCTCTTGATGATTGCAAAGATTTGATGCAGTCTGCTTTGGACAGTCTTGATTTCTCCAACGCTTTGGTTCGTGACAACAACATTCAATCTGTTCATGACCAAAATGCTGATCTTAGGAATTGGTTGAGTGCAGTTGTCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATCAAAAAGAGGCTGAGAAGAAGATTAAGGAGCAATTGCAAACTGAGACTATAGACCGCGCGACAAAGGTCACAGTTGTTGCTCTTGATGTTGTGACCGGTTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTGAGGAGATTGATAATGAGGAAGGATTCCCTACATGGGTCTCTGCTACTGACCGCAAGCTTTTGGCTCAAATGCAAAGAAAAGGATGGAGATCAAAAATTAGGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACCGTTTCTGATGCTATTAAATCTTACCCTAAGGGAAACAAAGGAAGATATATTATCTACGTTAAGGCTGGTATCTATGACGAGTACATCACTGTCCCCAAAGAGTGCGTTAACTTGCTTATGTACGGTGATGGCCCTCAAAGGACTATTATCACCGGTCATAAGAACTTTGGCAAGATGGGTATCAAGACCATGCAAACCGCCACCTTTGCCAACACCGCAATTGGGTTCATTGCAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCATCAAGCTGTTGCTTTGAGAAACCAAGGAGATATGTCTGCTTTCATTGGTTGCCATATCTTGGGTTACCAAGATACCTTGTACACTCAAACCAACAGGCAATTCTACCGCAATTGTGTTATCTCTGGTACCATCGATTTCATTTTTGGATCATCTCCCACCTTGATCCAACACTCCGTGATCATCGTAAGGAAGCCCCTGGACAACCAATTCAACACAATTACCGCAGATGGATCAGAAGATTCTAAGAACTTGAACACTGGTATTGTGATCCAGGACTGCCAGATCGTTCCAGAGCAAGCATTGTTCCCTGTAAGGTTCCAAATCAAATCTTACTTGGGCAGGCCATGGAAGACAAATGCAAGGACCGTCTTCATGGAATCCACCATCGGTGACTTTATTCATCCAGATGGATGGTTCCCTTGGGACGGTTCAGTCAATTTGGACACATGTTACTATGCAGAGTATGCCAACACTGGACCTGGTGCCAATCTTTCCAGAAGGATCAAGTGGAGGGGTTATCACGGTGCCATTAGCAAGGACGAGGCTACAAAATTCACCGCCGCTGAATGGCTCAAGGCTGGACCCAAGTCTGGAACCGACTGGTTGAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAAGCTTAA 1737 0.4444 MSGKIIISVVSLILVVGVAIGVVVAVHKNGEDPEIQTQQRYLRVICQNAEDQKLCHETLNNVRGADAADPKAYVAAAVKAATDTVIRAFNMSDRLTVEYGDKDSGIKMALDDCKDLMQSALDSLDFSNALVRDNNIQSVHDQNADLRNWLSAVVSYKQACMEGFDDQKEAEKKIKEQLQTETIDRATKVTVVALDVVTGLSNILQEFGLKLDLKPASRRLLSEEIDNEEGFPTWVSATDRKLLAQMQRKGWRSKIRPNVVVAKDGTGQFKTVSDAIKSYPKGNKGRYIIYVKAGIYDEYITVPKECVNLLMYGDGPQRTIITGHKNFGKMGIKTMQTATFANTAIGFIAKAMTFENTAGPDGHQAVALRNQGDMSAFIGCHILGYQDTLYTQTNRQFYRNCVISGTIDFIFGSSPTLIQHSVIIVRKPLDNQFNTITADGSEDSKNLNTGIVIQDCQIVPEQALFPVRFQIKSYLGRPWKTNARTVFMESTIGDFIHPDGWFPWDGSVNLDTCYYAEYANTGPGANLSRRIKWRGYHGAISKDEATKFTAAEWLKAGPKSGTDWLKALHVPHYLGFKA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04884 578 PANTHER PECTINESTERASE 13 566 - -
Trre13g04884 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Trre13g04884 578 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
Trre13g04884 578 FunFam Pectinesterase 252 576 - -
Trre13g04884 578 NCBIfam pectinesterase inhibitor domain 10 179 IPR006501 GO:0004857
Trre13g04884 578 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
Trre13g04884 578 Gene3D - 252 576 IPR012334 -
Trre13g04884 578 CDD PMEI-like_3 45 202 - -
Trre13g04884 578 SMART PMEI_2 37 196 IPR006501 GO:0004857
Trre13g04884 578 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Trre13g04884 578 FunFam Pectinesterase 38 201 - -
Trre13g04884 578 Coils Coil 161 181 - -
Trre13g04884 578 Pfam Plant invertase/pectin methylesterase inhibitor 43 195 IPR006501 GO:0004857
Trre13g04884 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 179 IPR035513 -
Trre13g04884 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04884 Trre-Chr13 55280750 55282575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04884 1 576 Carbohydrate Esterase AT2G47030 40.098 2.71e-137 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04884 K01051 - gmx:100781507 807.749