Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04882 ATGTCAGGAAAGATAATTATATCTGTTATTTCTCTTATCCTTGTTGTAGGTGTTGCCATTGGAGTTATTGTTACTGCTCACAAAAAAGCTGAAGATCCTGAGATTCAAACTGAACAAAGATATCTTAGAGTTATTTGCCAAAATGCAGAACATCAAAAACTCTGCCATGAAACTCTTAGCTCTGTCCGTGGCGCCGACGCTTCAGATCCTAAGGCATACATAGCGGTTGCAGTGAAAGCAGCCACTGACAATGTAATTAGAGCATTTAACATGAGTGATAGACTCATTGTTGAGTACGGCGACAAGGATAGGCACATCAAGATGGCTCTTCGTGTCTGCAAAGAGATGATGGAGTTTGCTTTGGACAGTCTTGATCTGTCCACCATTGTGGTTCGTGACAACAACATTCAATCTGTTCATGCTCAAAATGCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATGAAAAAGAGGCTGAGAAGAATATTAAGGATCAATTTCATGCTCAGACTATAGACCGCGCGACAAAGGTCACTGTTGTTGCTCTTGACATTGTGTCTGATTTATCCAACATACTCCAAGAATTCGGTATGAAATTGGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTGAGGAGATTGATAATGAGGAAGGATACCCTACATGGGTCTCTGCTACTGACCGCAAGCTTTTGGCTAAAATGAAAAGAAAAGGATGGAGATCAAAAATTACGCCTAATGTTATTGTTGCCAAGGATGGTAGTGGCCAATTTAAAACCATTACGGAAGCTCTTGCTGCTTACCCTAAGGGATACAAAGGAAGATATTTTATGTACGTTAAGGCTGGTATCTATAACGAGTCCATCATTGTCCCCAAAGTGTGCGTTAACTTGATGATGTACGGTGATGGCCCTCAAAGGACTGTTATCACCGGTCATAAGAACCAAAAAAAGGATAATATCAGTATCGCGGAGAACGCCAGCTTTGCCAACAACGCAATTGGGTTCATTGCAAGGGCAATGAAATTTGAGAACACAGCCGGTCCTGAGGGTGAACAAGCTGTTGCTTTGAGAAACCAAGGAGATATGGCTGCTTTTGTTGGTTGTGATATTGTAGGTTACCAAGATACCTTGTACGCTCAATCCAACAGGCAATTCTACAGTCAGTGTAATATTTATGGTACCATCGATTTCATCTTTGGAACAGCTCGCACCTTGATCCAAAACTCTACAATCATCGTAAGGAAGCCCAACAAGGATCAAACCAACGCAATTACCGCAGACGGATCAGAAGATTCTTGGAATTTGTACACTGGTATTGTGATCCAGGGCTGCCAGATCATCCCAGAGGAAGAATTGTCCCCAATCAAATCTTACTTGGGCAGACCATGGAAGACAAATGCAAAGACAGTCTTCATGGAATCCAACATCGGTGACTTTATTGATCCAGAAGGATGGGCCCCTTGGAACAATTCAAGACCATTTGTGGACACATGTTACTTAGCAGAGTATAATAACAATGGACCTGGTGCCAATCTTTCCAGAAGGATCACGTGGAATGGTTATCATGGTAACATTAGCGAGGCCGACGCTAAAAATTTCACCGCAGGTGAATGGCTCAAGGCTGGAACTGAATCCTCACCCATACTCGGAACCGTGTGGTTTAAGGGTCTTCATGTTCCTCACTACCTTGGCTTCAAACATTGA 1740 0.4264 MSGKIIISVISLILVVGVAIGVIVTAHKKAEDPEIQTEQRYLRVICQNAEHQKLCHETLSSVRGADASDPKAYIAVAVKAATDNVIRAFNMSDRLIVEYGDKDRHIKMALRVCKEMMEFALDSLDLSTIVVRDNNIQSVHAQNADLRNWLSAVISYKQACMEGFDDEKEAEKNIKDQFHAQTIDRATKVTVVALDIVSDLSNILQEFGMKLDLKPASRRLLSEEIDNEEGYPTWVSATDRKLLAKMKRKGWRSKITPNVIVAKDGSGQFKTITEALAAYPKGYKGRYFMYVKAGIYNESIIVPKVCVNLMMYGDGPQRTVITGHKNQKKDNISIAENASFANNAIGFIARAMKFENTAGPEGEQAVALRNQGDMAAFVGCDIVGYQDTLYAQSNRQFYSQCNIYGTIDFIFGTARTLIQNSTIIVRKPNKDQTNAITADGSEDSWNLYTGIVIQGCQIIPEEELSPIKSYLGRPWKTNAKTVFMESNIGDFIDPEGWAPWNNSRPFVDTCYLAEYNNNGPGANLSRRITWNGYHGNISEADAKNFTAGEWLKAGTESSPILGTVWFKGLHVPHYLGFKH 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04882 579 Gene3D - 252 560 IPR012334 -
Trre13g04882 579 FunFam Pectinesterase 4 255 561 - -
Trre13g04882 579 CDD PMEI-like_3 45 202 - -
Trre13g04882 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Trre13g04882 579 FunFam Pectinesterase 38 201 - -
Trre13g04882 579 NCBIfam pectinesterase inhibitor domain 22 173 IPR006501 GO:0004857
Trre13g04882 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Trre13g04882 579 SMART PMEI_2 37 196 IPR006501 GO:0004857
Trre13g04882 579 Pfam Pectinesterase 258 552 IPR000070 GO:0030599|GO:0042545
Trre13g04882 579 Pfam Plant invertase/pectin methylesterase inhibitor 43 196 IPR006501 GO:0004857
Trre13g04882 579 SUPERFAMILY Pectin lyase-like 255 555 IPR011050 -
Trre13g04882 579 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Trre13g04882 579 PANTHER PECTINESTERASE 8 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04882 Trre-Chr13 55270146 55271969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04882 1 577 Carbohydrate Esterase AT2G47030 36.557 1.20e-118 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04882 K01051 - gmx:100815015 690.649