Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04881 ATGGAAGAAAATGCATTCTCTTCAGCCAAAATTTCAGTCTGGTGGGACATAGAAAACTGTCAAGTCCCCAGAAACTTCAATCCCAACACCATCGCTCAAAACATCACCGCCGCCCTCTTCAACTCCAACTTCCACGGTCCCCTCTCCATCTCCGCCTACGGCGACACCACTCGTCTCCCTCCTCACGTTCAACACGCTCTCTCTTCCACCGGCGTCTCCCTCCACCACGTCCCCGCCGGTGTGAAAGATGCGAGTGATAAGAAGATACTCGTTGATATGCTACTATGGGCGGTTGATAATCCTGCACCTGCTAATTATTTGTTGATTTCTGGTGATAGAGATTTTTCAAATGCGCTTCATCAACTTCGTATGAGAAGGTATAATGTTCTTCTTGCTCAACCTTTTTGTGCTTCTGCACCTCTCACCGCCGCCGCTAAATTTGTTTGGTCTTGGCCTGTTCTCATCGCCGGCGGTCCCCCTCGCAACAATCTTACAAATCAAAACCCTAATTTCTCTAACAAACTCATTTATCAACCTAAACTACCAAACTCAATACAAGAATCTGTTCAAATTCAAAAACCAGAGAGTGATGATAATAATAATAATAATAACAGTATCAATAATGATAACTCTGTTATCAATGCCGAACAATCGAAGTCGTCGAAATTGTTTCGATTTCCACATCAATTTTTTAAGAATAATGACACTACAATGATTCCAACTGGTACTAATCTCAAAAACAATGCTGGTTCTAGTCATGATTTAAATCATAATAAGCAATTAATGCTTCCAATTTCTTCTAGTGGTTATGATGAATCACCTATTTTGTCTGCAAGTGCCCCAATTGTAGCTAGAGAAGATACTAAGTCTATAAGTAGTAGCTTAACTACATTGCTGAAATCAGATAACAACCCTAATTGTGGTGTTGGTGGTGGTCAAGAATTTTCTGATGTGAATTTGAAGCAAAAGAATTCTAGTTCGGGTGGTGGTTCTGAACAGTTGTTGGTTTCTAATGCTTTGGATTTTGCAATTGAGCAACAGAGGGTAGTTGAAAAAGACTATGCTAATAAATCATTAAATCTGTATCTTGTTGCGAATGAGAATCAATGGAAGTGTGTCAATCCTTTAGGTGGATTGCCGAGTCATTTCCCAGAAGCAATTTGGGTTAGAATAGAGAAGTTCCTTGCTTCATCCCCAGGAAGATTGGCGATTCTGGCGTCTCGCAGCAAATATGAAGCATCTTTAATCCTAAAGAGATTGTGCCTTGAAGAGCTTGTGTTGGGTGATGTACTTACGATTTTGGAGATTATAATCACAATCAAGAAATGGATTATACCTTGTCATTCTAGATGGCAGCCAATTAGAATTTCAGTGACAGAGGCTAAGGGGGAGGATAACTGA 1401 0.4054 MEENAFSSAKISVWWDIENCQVPRNFNPNTIAQNITAALFNSNFHGPLSISAYGDTTRLPPHVQHALSSTGVSLHHVPAGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNVLLAQPFCASAPLTAAAKFVWSWPVLIAGGPPRNNLTNQNPNFSNKLIYQPKLPNSIQESVQIQKPESDDNNNNNNSINNDNSVINAEQSKSSKLFRFPHQFFKNNDTTMIPTGTNLKNNAGSSHDLNHNKQLMLPISSSGYDESPILSASAPIVAREDTKSISSSLTTLLKSDNNPNCGVGGGQEFSDVNLKQKNSSSGGGSEQLLVSNALDFAIEQQRVVEKDYANKSLNLYLVANENQWKCVNPLGGLPSHFPEAIWVRIEKFLASSPGRLAILASRSKYEASLILKRLCLEELVLGDVLTILEIIITIKKWIIPCHSRWQPIRISVTEAKGEDN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04881 466 PANTHER LIMKAIN B LKAP 8 263 IPR024768 GO:0005777|GO:0010468
Trre13g04881 466 MobiDBLite consensus disorder prediction 317 331 - -
Trre13g04881 466 CDD PIN_limkain_b1_N_like 10 134 - -
Trre13g04881 466 MobiDBLite consensus disorder prediction 302 331 - -
Trre13g04881 466 Gene3D - 4 151 - -
Trre13g04881 466 MobiDBLite consensus disorder prediction 186 210 - -
Trre13g04881 466 Pfam NYN domain 10 149 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04881 Trre-Chr13 55259771 55261544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04881 3 160 C2H2 Transcription Factor Family AT5G61190 70.886 2.81e-72 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04881 - K17573 mtr:11425911 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04881 13 55259771 55261544 Trre13g04881 13 55259771 55261544 ECH