Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04877 ATGGAAGCTTTTCAATTGTACGGTAATGGTGTTGGTGTTGGTGTTGGTGGTTCCTCTGATTTAAGGTCTATGGAGAAAAGATCAGATTGGGATTTGAATAATTGGAATTGGGATGGTCATCTTTTTATAGCTACTAGTAAATTGAATCCTGTACCCGAACCCGAACATAGACAATTTTTGCCTCTTCTTGGTGGTGCTGGTGGTTCATCTAACTCAAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGGGATTTGTCAAGGGAACAAGGAAGGTGAGAGGAAGAGGAGGGTTATTGTTGTGGAGGATGATGAACTAGGTATGAATAAAGAAGGTGCTAGTTTAACCTTGAATCTTGCTGGTGCTGGTGGTGTTCAGGTGGCTGCTACATGGGAAGGAAATATTGGGAAGAAAAGTAGAGTGGCTGGTGGAGGTAGTTCTAGTAGAGCATTTTGTCAGGTGGAGGATTGTCGCGCAGATCTCAATAATGCGAAAGATTATCATAGACGTCATAAAGTTTGTGAGATACACTCCAAGGCTAGTAAGGCGCTTGTTGGAAATGCGATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCTGGCCATAATAAAAGAAGGAGAAAAACAAATCAGGATGCTGTTCCTAATGGAAGTTCACCAAACAATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCCTGACAGGTCAAATCAGACCGCGGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCCAATCAGAATGGTGGACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAGAATCTGTTGAAAGAAGGATCTTTATCTGGGAAGTCTGAGATGGTTTCTACTTTATTTACGAATGGTTCTCAAGGTTCTCCAACTGTTACAGTACAGAATCAAGCAGTTTCTATTAGTGAAATTCAGCATCAAGTGGTGCATACACATGATGCCAGGGTTGTTGATCAACAAACCACATCCTCTGCAAAGCCAGGTGTTTCAAACAGCCCTCCGGCTTACTCAGAAGCAAGAGACAGTACTGCTGGACAGACCAAGATGAATGATTTTGATCTGAATGACATTTATATTGACTCAGATGATGGCATAGAGGATATAGAAAGGTTGCCTGTCACTGCAAATCTTGGTACTAGTTCTCTTGATTACCCATGGGTGCAACAGGATTCACATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAGTCCCCCTCTAGTTCCACGGGCGAAGCTCAGAATCGCACGGATCGGATTGTTTTTAAACTTTTTGGTAAAGAACCAAGTGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACGGATATTGAAGGCTATATACGGCCTGGTTGTATCGTTTTGACTATTTATCTGCGTCAGGCTGAGGTTGCGTGGGAGGAGCTTTGCTTAGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGATTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTCAATGGCCAGGTTGTCATTGATACATCCTTACCGTTCAGGAGTAACAATTATAGTAAAATTTTGAGTGTTAGTCCAATTGCTGTACCAGCATCAAAGACAGCTCAATTTTCTGTGAAGGGTATCAACCTGACTCGTCCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGGATTATTTGGTCTGTGAAGATACTCATGAGTCTATGGATCAATGCTCCAAGGATGAGCTTCAGTGCGTCCAATTTTCATGTTCTGTCCCTGCGATCAATGGACGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTCTCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAACCTTTATTGGAATCAAGTGATACTTATCCAGATGTGGAAGGGGCTGGAAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAGATAAAATCTAGGACAGTTCACTTGAATTCTAGTGCGGATCTCTTTCCATTAGATCGATTCAAATGGCTCGTGGAGTTCTCTGTGGACCATGATTGGTGTGCAGTAGTTAAAAAGCTATTGAACCTCATGCTTGATGGAACAGTTAGTACAGGAGACCACACATCCCTGTATCTTGCACTTTCAGAGTTGGGTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGAAGTTGGTGGAGCTTCTGTTGAGATATGTCCCTCAAAATGTTTCAGATAAACTAGGACCTGAAGACAAGGTGCTGGTTAATGGAGAGAATAAAAACTTCTTGTTTAGACCTGATGCGGCCGGTCCTGCTGGTCTGACACCACTCCATATTGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAATAGTATTCGTGACAGCACGGGTTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACTTACATTCACTTGGTGCAGAAGAAAATCAACAAGAGACAAGGAGGGCCTCATGTGGTGGTTGAAATTCCTAGCAATCTGACAATGTTTGATACAAGCCAGAAGAAAGATGAATCATCCACCACCTTTGAAATTGGAAATGCTGGTGTTAGAAGTCTCCAAAAGAACTGTAAACTTTGTGATCAGAAGTTGTCGTGTAGAACTGCTGTAGGGAAGTCTTTCGCATACAGACCTGCAATGCTGTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCTCTTCTGTTCAAAAGCTCGCCCGAAGTTCTGTATATATTCCAACCTTTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 3027 0.4288 MEAFQLYGNGVGVGVGGSSDLRSMEKRSDWDLNNWNWDGHLFIATSKLNPVPEPEHRQFLPLLGGAGGSSNSNSSSSCSEQLDLGICQGNKEGERKRRVIVVEDDELGMNKEGASLTLNLAGAGGVQVAATWEGNIGKKSRVAGGGSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNNDQTSSYLLISLLKILSNMQPDRSNQTADQDLLTHLLRSLANQNGGQGGRNLSNLLREPENLLKEGSLSGKSEMVSTLFTNGSQGSPTVTVQNQAVSISEIQHQVVHTHDARVVDQQTTSSAKPGVSNSPPAYSEARDSTAGQTKMNDFDLNDIYIDSDDGIEDIERLPVTANLGTSSLDYPWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQNRTDRIVFKLFGKEPSDFPLVLRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQAEVAWEELCLDLTSSLNRLLDVSDDDFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPASKTAQFSVKGINLTRPATRLLCALEGDYLVCEDTHESMDQCSKDELQCVQFSCSVPAINGRGFIEIEDQGLSSSFSPFIVVEEDVCSEICVLEPLLESSDTYPDVEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVHLNSSADLFPLDRFKWLVEFSVDHDWCAVVKKLLNLMLDGTVSTGDHTSLYLALSELGLLHRAVRRNSRKLVELLLRYVPQNVSDKLGPEDKVLVNGENKNFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWNSIRDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGPHVVVEIPSNLTMFDTSQKKDESSTTFEIGNAGVRSLQKNCKLCDQKLSCRTAVGKSFAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFQPFRWESLEYGTS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04877 1008 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Trre13g04877 1008 MobiDBLite consensus disorder prediction 216 242 - -
Trre13g04877 1008 MobiDBLite consensus disorder prediction 423 455 - -
Trre13g04877 1008 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Trre13g04877 1008 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Trre13g04877 1008 Pfam SBP domain 153 226 IPR004333 GO:0003677
Trre13g04877 1008 Gene3D - 752 903 IPR036770 -
Trre13g04877 1008 SUPERFAMILY Ankyrin repeat 765 894 IPR036770 -
Trre13g04877 1008 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Trre13g04877 1008 MobiDBLite consensus disorder prediction 355 384 - -
Trre13g04877 1008 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 893 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04877 Trre-Chr13 55226461 55231668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04877 5 1008 SBP-box Gene Family AT3G60030 53.445 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre13g04877 SBP 9.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04877 - - tpra:123891063 1850.1