Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04871 ATGGATGACTGTTGTGCTGTTTGCGCCGAGCCATTGGAATGGGTTGCATACGGACCTTGTTTACACCGTGAGGTCTGTTCCACCTGTGTCGCTCGTCTCCGTTTCATTTGCGATGATCGCCGTTGTTGTATCTGTAAGACCGAATGCAATCTCATCTTTGTTACCAAGGCTCTAGGAGATTATACAAGGGTGATAGATTTTTCATCCCTGCCGTCTGAGGTAAGGGAAGGCAAGGTTGGACCGTATTGGTATCATGAGGATACCAATTCATTTTTTGATGATGTGGACCATTACAAGATGACCAAGGCTATGTGCAGACTTTCATGCAGTGAATGTGACAAGATGGAGGACCAACAAAATGATGGTCCTAGGCGACGAGAAAGGTTTAGGAATATAGGGCAGCTGAAGGGTCATTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTGTATACCAGAGCTCAGTTGAATCAACACATAAGCACTGGTGATTCCGAGGTGGATGGAAGTGAGAGTGACAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTTTGCAGAACCCCATTTTATGGGGACAATGAACTGTACACACACATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAGTATGAATACTATAAGAATTACGATGACCTAGAGATCCACTTCCGACAACAGCATTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAATTTATTGTTTTTCAATCTGAATCAGAGATGAAGAGACATAATGCTATGGAACATGGAGGGCGCATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCAACTAGTTTTCGATATAGACACAATAATGAACAGGATCAACGCCGTGGAAGAGGCCGTACGTTTCGTCGTGATCATTCTGAAAGTCAACTTTCCATGGCCATTGAAGCCAGTTTGGAGACTGCTAATGCTGAGCAAACATATCGTGAGCCAACTTCAAGTAATGGCCAAAATGCTTATGCTGATGGGGATGCAGATATAGATTCCATCATTAATCCGTTTGAATCATTAGCTACGGCAGGTTCTGAATCAACTTCAAGATACCGTCAGGCCTTAGGGCATAGCTCTAAATCTTTGGTAGATTCTTCCTTTCCTCCACTTCCCATAACTTCCAACAATGGCCAGCAAAGGTCCAAACATGAGTCTGAAGGTTCATCAAGCAATACCATGGCAGCACGTTTACGTCGCCATGGCAACAGAAATATATCTGTTATTAATTCTGGAAATGCCTGGGCTGTACCAGGCCGTGGACCTGTACAACCATCAAGTACTCCTTCACAGTCTAAAAAGTCAACAAATCATGCTCTTGGAGGGTCTCAGAATTCTGGCCAGACGAAGACAGTAATTAACAGTGTAATTCCAACATCAAGTTATGCTAATCCTATTCAAGCCGCACAGAGAACTGCTAATGGTAGAATCGTTCACTCCGCATCAGCTCCAAACCTCGTTGAGAACAACCCTGTTGGAGTTTCAATTTCTGACTTTCCTCCAGTTTCTGCTGCACAAGTGAGCAAGTTACCTATGAGTAGCCAGCCTCCGTTGAATGTGGAAAATGTTCAGTCTGCCAACAAGGCCTTGGTTGAGAAAATTCGCAGTGCGCTTGATTTTGATGAAGATAGATACACAATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACAATAGATACTAATACATATGTGGATTATGTGCAGCAGTTTGGCTTGTTTGAACTTGTACCGGAGTTGGCAAGACTATGCCCGGATCCTCGGAAGCAGAAAGAACTTGTGGAATCTTACAATGCTGGTTTGCAAAGAAATGCTTTTCTAGAAAATGACAGGGTTTATGGCAGCGCTAGCACCCAGCGTAAGGACAATAATGTTGACAAGAAAGGTAAAGGTAAGTCATTAGAGGTTAGGCGGAGTAACTCCACTGAGAGGTTAGCAGATAGCTTTTTAAACACTGTACATCAACTACAGTCAACTTATAAACCTTCTGAAGAGAAGTTGGAGGTGCTATCAAAGGGTGCTTATCGCACAGACAAAGGTAAATTTAAAATCGAGCATCAGGCCGGTACAAACTCTAGCAGTCAACATAAGGTTAAGCTTGATGGGCAAACTGAAACGTCAAATGGCAGTTTATCTAATCATCAAAATAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAGCTTCCAAGTTTCTCAGAGTGCGCCTTGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCACGGACTGCATCTAATCTTGGAACAACAGACAGTTTAGATGGCAACCAGAATGATTCTGGAGTTGGGCTGCCCGTGCGAGGTGTTTGGCGAAAGGGTGGAGGTCAAAAACTCTTCCCCTAA 2469 0.4358 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLIFVTKALGDYTRVIDFSSLPSEVREGKVGPYWYHEDTNSFFDDVDHYKMTKAMCRLSCSECDKMEDQQNDGPRRRERFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESDRGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFIVFQSESEMKRHNAMEHGGRMSRSKRNAALQIPTSFRYRHNNEQDQRRGRGRTFRRDHSESQLSMAIEASLETANAEQTYREPTSSNGQNAYADGDADIDSIINPFESLATAGSESTSRYRQALGHSSKSLVDSSFPPLPITSNNGQQRSKHESEGSSSNTMAARLRRHGNRNISVINSGNAWAVPGRGPVQPSSTPSQSKKSTNHALGGSQNSGQTKTVINSVIPTSSYANPIQAAQRTANGRIVHSASAPNLVENNPVGVSISDFPPVSAAQVSKLPMSSQPPLNVENVQSANKALVEKIRSALDFDEDRYTIFKDISAQYRQGTIDTNTYVDYVQQFGLFELVPELARLCPDPRKQKELVESYNAGLQRNAFLENDRVYGSASTQRKDNNVDKKGKGKSLEVRRSNSTERLADSFLNTVHQLQSTYKPSEEKLEVLSKGAYRTDKGKFKIEHQAGTNSSSQHKVKLDGQTETSNGSLSNHQNKEDGGGGNKQRKKASKFLRVRLGDGSASALLDLENSRTASNLGTTDSLDGNQNDSGVGLPVRGVWRKGGGQKLFP 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04871 822 PANTHER ZINC FINGER PROTEIN 598 1 743 IPR044288 GO:0061630|GO:0072344
Trre13g04871 822 MobiDBLite consensus disorder prediction 716 759 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 440 479 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 643 671 - -
Trre13g04871 822 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Trre13g04871 822 MobiDBLite consensus disorder prediction 652 671 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 780 822 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 717 750 - -
Trre13g04871 822 CDD RING-HC_ZNF598 3 53 IPR041888 -
Trre13g04871 822 MobiDBLite consensus disorder prediction 337 354 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 302 324 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 299 324 - -
Trre13g04871 822 SMART c2h2final6 195 218 IPR013087 -
Trre13g04871 822 SMART c2h2final6 107 143 IPR013087 -
Trre13g04871 822 SMART c2h2final6 250 279 IPR013087 -
Trre13g04871 822 SMART c2h2final6 219 249 IPR013087 -
Trre13g04871 822 MobiDBLite consensus disorder prediction 453 479 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 337 358 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 382 423 - -
Trre13g04871 822 MobiDBLite consensus disorder prediction 780 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04871 Trre-Chr13 55184618 55188355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04871 1 817 C2H2 Transcription Factor Family AT3G62240 54.259 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04871 K22381 - gmx:100780426 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04871 13 55184618 55188355 Trre13g04871 13 55184618 55188355 ECH