Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04863 ATGGCATCAGGTGGTGTTGCACCTGCTTCTGGATTTATAGATAAGAATGCAAGTTCTGTTGGTGTTGAAAAATTGCCTGAGGAGATGAATGACCTGAAAATTAGGGATGATAAGGAAATGGAAGCCGCCACTGTGGTAGATGGAAATGGGACCGAAACCGGACATATAATTGTCACAACAATTGGTGGTAAAAATGGCCAATCAAAGCAGACAATAAGCTATATGGCCGAGCGTGTTGTTGGACATGGATCTTTTGGTGTAGTTTTTCAGGCAAAGTGTTTGGAGACGGGAGAAACCGTGGCCATAAAGAAGGTTCTTCAAGACAAGAGATACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCTAATGTTGTATCTTTGAAGCATTGCTTCTTCTCGACGACTGAAAAAGATGAGCTTTATCTTAACTTGGTGCTTGAGTATGTTCCTGAGACTGCTAGTCGGGTGATCAGACACTACAACAAAATGAATCAAAGAATGCCTATGATATATGTTAAACTTTATTCTTACCAGATTTGCAGAGCACTTGCTTATATTCACAACAGTATTGGAGTATGTCACAGGGATATTAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAACTGAAGATATGCGATTTTGGAAGTGCTAAAGTCTTGGTAAAGGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTATACCACAGCCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCGCTCTTTCCTGGCGAGAGTGGAGTTGACCAACTTGTGGAAATTATAAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGTATGAATCCAAATTATACAGAGTTTAAGTTTCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGAGAATGCCACCTGAGGCTGTGGATCTTGTCTCAAGACTATTGCAATACTCTCCAAATCTTCGAAGCACAGCATTGGAGGCTCTAGTTCATCCATTCTTTGATGAGCTGCGCGATCCCAACACTAGGTTGCCAAATGGACGCTTCCTCCCTCCATTATTTAACTTCAAAGTCAATGAGCTCAAAGGAGTGCCTGCTGAGATGTTGGTGAAGCTGGTTCCACCTCATGCAAGAAAACAATGTGCTTTGTTCGGATCATCATCGTAA 1239 0.4237 MASGGVAPASGFIDKNASSVGVEKLPEEMNDLKIRDDKEMEAATVVDGNGTETGHIIVTTIGGKNGQSKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETASRVIRHYNKMNQRMPMIYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQCALFGSSS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04863 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Trre13g04863 412 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 39 404 - -
Trre13g04863 412 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04863 412 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04863 412 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Trre13g04863 412 FunFam Shaggy-related protein kinase kappa 154 402 - -
Trre13g04863 412 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Trre13g04863 412 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Trre13g04863 412 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04863 412 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Trre13g04863 412 CDD STKc_GSK3 69 361 IPR039192 -
Trre13g04863 412 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04863 Trre-Chr13 55129787 55132287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04863 80 361 Core Cell Cycle Gene Families AT1G76540 34.828 2.00e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre13g04863 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04863 K00924 - gmx:100788046 774.237