Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04846 ATGCTGGAGATTCAGAATGAACAACCGGAGCAGCAACAAAGACTCAACAATTTCACCGTAGAACCAACAAACTCTCAATTTCCCATCGACATCAACAACAACAACAACAATGGCATTACTACTTTCCCCAATCAAGCTAACGCATTCGATTCTGGATTTCCTCCTCCTCCGCCTCCTCCTCCTAATTCTAACTTCTCCATTCATCCTCCTCCTCCTCCTCCTCGCAAACGACCCTGGGGTGCTCCTTCAGTTCCAGATCAAGTGGATGCTACGGGTCATGTCAAAGTTTACGTTGCACCAGTTCCAAGAACAGCATCTGAGTCTGATGTCCGCCTTGTGTTCGAAGGATATGGAACTGTTGTTGAGGTTGTTCTTTTAAGGGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAGTACACTTTTCCTGGAGAATCATTTCCCGTTGTTGTCAGATTTGCTGATCGAGATCGTGAACGTTTTGGGCTTCGAGGCTTCTGCCGAAACATGGAAAAGAAAGATTCTACGGAAGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAAAGAAACTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCATCTTGCCGAATCGTGGATATTGTTTTGTCAAATTTTCTAGTAAAGAGATGGCACTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCAGTAATTGTTCGTTTTGCAGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAATGCAAATTATGGTCCCAATTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTTGTGATCCCAATAATGGAGGTAGTATTATGCATAATGGTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACACGCACATTCACATTTGGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACTTTGCCTTCTCAACCGTTTAATACCGAGGTGCAAAGACAATTTCATCCAGCAGATTTGCCGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACCACATCTGATCTGTCTACAGATCCCCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAATTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCCACATGAGCAAGATGATCCTAGCTTTCTCCGACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATCATGATCACTTGGAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1554 0.4344 MLEIQNEQPEQQQRLNNFTVEPTNSQFPIDINNNNNNGITTFPNQANAFDSGFPPPPPPPPNSNFSIHPPPPPPRKRPWGAPSVPDQVDATGHVKVYVAPVPRTASESDVRLVFEGYGTVVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESFPVVVRFADRDRERFGLRGFCRNMEKKDSTEVVDKVFVGNINKETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSKEMALAAIKGLNRTFTMRGCDQPVIVRFAEPKKPKMGESRGNYLPANANYGPNSQEPAVWPLPNFCDPNNGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPSQPFNTEVQRQFHPADLPVRNIEQQLSSQLPTQTERNNTVAGSTTSDLSTDPQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYALYDKESQKPHEQDDPSFLRPQLSLSSSQEVSQRQQETNHDHLESETSPVVEQV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04846 517 Gene3D - 416 481 - -
Trre13g04846 517 MobiDBLite consensus disorder prediction 401 433 - -
Trre13g04846 517 SUPERFAMILY RNA-binding domain, RBD 200 294 IPR035979 GO:0003676
Trre13g04846 517 CDD WW 433 462 IPR001202 GO:0005515
Trre13g04846 517 ProSitePatterns WW/rsp5/WWP domain signature. 435 460 IPR001202 GO:0005515
Trre13g04846 517 MobiDBLite consensus disorder prediction 482 497 - -
Trre13g04846 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 259 IPR000504 GO:0003723
Trre13g04846 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Trre13g04846 517 Pfam WW domain 433 460 IPR001202 GO:0005515
Trre13g04846 517 MobiDBLite consensus disorder prediction 467 517 - -
Trre13g04846 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 175 IPR000504 GO:0003723
Trre13g04846 517 ProSiteProfiles WW/rsp5/WWP domain profile. 435 462 IPR001202 GO:0005515
Trre13g04846 517 SUPERFAMILY RNA-binding domain, RBD 67 183 IPR035979 GO:0003676
Trre13g04846 517 MobiDBLite consensus disorder prediction 1 83 - -
Trre13g04846 517 PANTHER RNA BINDING PROTEIN 59 468 - -
Trre13g04846 517 Gene3D - 86 180 IPR012677 -
Trre13g04846 517 SMART rrm1_1 200 270 IPR000504 GO:0003723
Trre13g04846 517 SMART rrm1_1 95 171 IPR000504 GO:0003723
Trre13g04846 517 MobiDBLite consensus disorder prediction 1 48 - -
Trre13g04846 517 MobiDBLite consensus disorder prediction 401 424 - -
Trre13g04846 517 SUPERFAMILY WW domain 434 465 IPR036020 GO:0005515
Trre13g04846 517 MobiDBLite consensus disorder prediction 50 80 - -
Trre13g04846 517 Gene3D - 186 281 IPR012677 -
Trre13g04846 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
Trre13g04846 517 SMART ww_5 430 462 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04846 Trre-Chr13 55003720 55010511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04846 96 388 Eukaryotic Initiation Factors Gene Family AT1G71770 23.411 5.61e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04846 K13207 - gmx:100776162 628.632