Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04845 ATGCTGGAGATTCAGAATGAACAACCGGAGCAGCAACAAAGACTCAACAATTTCACCGTAGAACCAACAAACTCTCAATTTCCCATCGACATCAACAACAACAACAACAATGGCATTACTACTTTCCCCAATCAAGCTAACGCATTCGATTCTGGATTTCCTCCTCCTCCGCCTCCTCCTCCTAATTCTAACTTCTCCATTCATCCTCCTCCTCCTCCTCCTCGCAAACGACCCTGGGGTGCTCCTTCAGATCAAGTGGATGCTACGGGTCATGTCAAAGTTTACGTTGCACCAGTTCCAAGAACAGCATCTGAGTCTGATGTCCGCCTTGTGTTCGAAGGATATGGAACTGTTGTTGAGGTTGTTCTTTTAAGGGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAGTACACTTTTCCTGGAGAATCATTTCCCGTTGTTGTCAGATTTGCTGATCGAGATCGTGAACGTTTTGGGCTTCGAGGCTTCTGCCGAAACATGGAAAAGAAAGATTCTACGGAAGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAAAGAAACTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCATCTTGCCGAATCGTGGATATTGTTTTGTCAAATTTTCTAGTAAAGAGATGGCACTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGTTGTGATCAACCAGTAATTGTTCGTTTTGCAGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAATGCAAATTATGGTCCCAATTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTTGTGATCCCAATAATGGAGGTAGTATTATGCATAATGGTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACACGCACATTCACATTTGGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACTTTGCCTTCTCAACCGTTTAATACCGAGGTGCAAAGACAATTTCATCCAGCAGATTTGCCGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACCACATCTGATCTGTCTACAGATCCCCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAATTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCCACATGAGCAAGATGATCCTAGCTTTCTCCGACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATCATGATCACTTGGAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1548 0.4341 MLEIQNEQPEQQQRLNNFTVEPTNSQFPIDINNNNNNGITTFPNQANAFDSGFPPPPPPPPNSNFSIHPPPPPPRKRPWGAPSDQVDATGHVKVYVAPVPRTASESDVRLVFEGYGTVVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESFPVVVRFADRDRERFGLRGFCRNMEKKDSTEVVDKVFVGNINKETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSKEMALAAIKGLNRTFTMRGCDQPVIVRFAEPKKPKMGESRGNYLPANANYGPNSQEPAVWPLPNFCDPNNGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPSQPFNTEVQRQFHPADLPVRNIEQQLSSQLPTQTERNNTVAGSTTSDLSTDPQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYALYDKESQKPHEQDDPSFLRPQLSLSSSQEVSQRQQETNHDHLESETSPVVEQV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04845 515 ProSitePatterns WW/rsp5/WWP domain signature. 433 458 IPR001202 GO:0005515
Trre13g04845 515 Pfam WW domain 431 458 IPR001202 GO:0005515
Trre13g04845 515 MobiDBLite consensus disorder prediction 50 79 - -
Trre13g04845 515 SUPERFAMILY RNA-binding domain, RBD 55 181 IPR035979 GO:0003676
Trre13g04845 515 MobiDBLite consensus disorder prediction 399 422 - -
Trre13g04845 515 Gene3D - 184 279 IPR012677 -
Trre13g04845 515 Gene3D - 83 178 IPR012677 -
Trre13g04845 515 MobiDBLite consensus disorder prediction 1 83 - -
Trre13g04845 515 SUPERFAMILY RNA-binding domain, RBD 198 292 IPR035979 GO:0003676
Trre13g04845 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Trre13g04845 515 MobiDBLite consensus disorder prediction 399 431 - -
Trre13g04845 515 MobiDBLite consensus disorder prediction 480 495 - -
Trre13g04845 515 Gene3D - 414 479 - -
Trre13g04845 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 173 IPR000504 GO:0003723
Trre13g04845 515 MobiDBLite consensus disorder prediction 1 48 - -
Trre13g04845 515 SMART ww_5 428 460 IPR001202 GO:0005515
Trre13g04845 515 MobiDBLite consensus disorder prediction 465 515 - -
Trre13g04845 515 CDD WW 431 460 IPR001202 GO:0005515
Trre13g04845 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Trre13g04845 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 257 IPR000504 GO:0003723
Trre13g04845 515 SUPERFAMILY WW domain 432 463 IPR036020 GO:0005515
Trre13g04845 515 SMART rrm1_1 198 268 IPR000504 GO:0003723
Trre13g04845 515 SMART rrm1_1 93 169 IPR000504 GO:0003723
Trre13g04845 515 ProSiteProfiles WW/rsp5/WWP domain profile. 433 460 IPR001202 GO:0005515
Trre13g04845 515 PANTHER RNA BINDING PROTEIN 59 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04845 Trre-Chr13 55003720 55010511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04845 94 386 Eukaryotic Initiation Factors Gene Family AT1G71770 23.411 6.02e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04845 K13207 - gmx:100776162 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04845 13 55003720 55010511 Trre13g04845 13 55003720 55010511 ECH