Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04844 ATGGAGGATTATGAGATTGGATCTTATTTTCCTAGCTATTCATTATCAAGTGTGTTTGATTTATCTGAAGATAAGAATACATCTGTTGGGTTTATGGAGTTATTGGGTGTGCAGAACATGCATAGTATGCTTGATTTGCCGCCTGTGGTTGATGAAGCAGTAAAGAAAGCAGAAGAAGCACCACCTTTGGATGAGAAGAAAGAGTGTTCAGAGGTTTTGAATAGTCAACAACCAGCTACTCCTAACTCTTCTTCCATTTCATCTGCTTCTAGTGAAGCACTCAATGATGAACTAACTAAAACTGTTGACCAAGCTAATAATCCACTCCACAAACAGTTGAAGGCTAAGAAAACAACAAATCAGAAAAGACAGAGAGAAGCTAGAATCGCTTTCATGACTAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTTAAAAATAGCCCCTTTCCCAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTAAAAAAACACGTGGAGAGATCTTTGAATGATCCAACAATTGTAGTCACAACCTACGAAGGGAAACATACTCATCCAAATCCAATTATGGCTCGTTCTTCAGCTGTTCATGCTGGATCTTTATTACCACAACCTGAATGCACCACTAATTTTGCCTCTAATCAAAACTATAATATGTCTCAATATTATAATCAGCAGCGTCAACAAGCACTTTTTAATAGTTTATCATCTTTGGGTTTCCCTTCAAAGAATACTGCTCAAGAGAGATCATCACTTTGTAATAATAATCCAAGGTTAATGGACAATGGCCTTCTTCAAGATGTTGTTCCTTCACACATGTTCAAGGAGGAGGAGTAG 873 0.3826 MEDYEIGSYFPSYSLSSVFDLSEDKNTSVGFMELLGVQNMHSMLDLPPVVDEAVKKAEEAPPLDEKKECSEVLNSQQPATPNSSSISSASSEALNDELTKTVDQANNPLHKQLKAKKTTNQKRQREARIAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLNDPTIVVTTYEGKHTHPNPIMARSSAVHAGSLLPQPECTTNFASNQNYNMSQYYNQQRQQALFNSLSSLGFPSKNTAQERSSLCNNNPRLMDNGLLQDVVPSHMFKEEE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04844 290 MobiDBLite consensus disorder prediction 58 124 - -
Trre13g04844 290 Gene3D WRKY domain 124 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04844 290 PIRSF WRKY_txn_fact_IIc 1 290 IPR017396 GO:0003700
Trre13g04844 290 ProSiteProfiles WRKY domain profile. 135 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04844 290 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 235 IPR044810 GO:0003700
Trre13g04844 290 FunFam WRKY transcription factor 57 126 200 - -
Trre13g04844 290 MobiDBLite consensus disorder prediction 72 114 - -
Trre13g04844 290 Pfam WRKY DNA -binding domain 141 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04844 290 SUPERFAMILY WRKY DNA-binding domain 132 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04844 290 SMART WRKY_cls 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04844 Trre-Chr13 54999716 55001179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04844 9 289 WRKY Transcription Factor Family AT2G47260 46.789 8.72e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g04844 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04844 - - gmx:100784158 295.049