Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04838 ATGTCAAAAAGGAAGTTCGGATTCGAAGGTTTTGGCATAAACCGTCAATCAACCTACAGTTTTGAACGATCTGAAGCTCCTCAACGACTCTACGTTCCTCCTTCATCACGTAAAAGCCACGACAACTACGAAGACAATGACCTCGACAACATCGAGTTCGATGATGATGCCAACGAAGAACCAAACAACAACAGTAACACCGACAAAGGTGGTGATGGTGGTGAGGAAGAGGAAATCGATCCATTAGATGCTTTTATGGAAGGAATACATGAAGAGATGAAGGCAGCACCGCCTCCGAAGCCGAAGGAGAAAGTAGATGATAGATATAAAGATGATGAAGAGGATCATATGGAGAGTTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGTTAGCGTCGGATGCACTTCATGCTGGATATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTTGATGCTGGTTTGATTGATTATGATTCTGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTTGATCACACTGAAATTGATTATGAACCGTTTACTAAGGATTTTTATGAGGAGACACCTTCAATTTCAGGTATGAGTGAGCAAGATGTAACTGAATATAGGAAGAGTTTGGCTATTCGGGTATCGGGTTTTGATTGTCCTAAGCCAGTAAAAACATTTGAGGATTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCGAAAACTGGTTCCGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATTGGAGTTATATGTGCACCTACTAGGGAATTGGCACATCAGATATATCTTGAGGCGAAGAAATTTGCAAAAGCGTATGGTATACGTGTCTCTGCTGTCTACGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTGAAAGCAGGCTGTGAGATAGTTGTTGCTACACCCGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGCAAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCTATTGTCGGTCAGATTAGGCCGGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTCACAAAGTTGAGAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACCGTGGGAGAGGTGGGGACGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCGACCGATTCTGAGAAGTTGCCGTGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACCGTGGATGAAATTGAATCGCAATTAAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCACCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATAAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCCCAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGAGGTGGGAGGAAAGGCAAAGGAAGGGGTGGGGGTGCGAGTGGCAAAGGCGTGCGTGGAGTGGATTTTGGCTTGGGGATTGGATATTCTACGGAGCCAAACAATCCATCATCTAACACAGTTCCAACTCGGTCCGGTGCTGTTAATTCTCTGCGAACAGGAATGATGTCCCAATTTCGGAGCAGCTTCGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTTAGTAATACTACAAGTGTGGCTGTTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATTGGTGGCGATATAAATATTCATCAGCAAATTGCTTCATACAACAATCCTGCTACATCAGCCGCAAATTCCACTAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAACAGCACAAACAGCATTTCTAAACCTAGAGAAAGGCGGAGACCATCAGGTTGGGATAGATAG 2334 0.4302 MSKRKFGFEGFGINRQSTYSFERSEAPQRLYVPPSSRKSHDNYEDNDLDNIEFDDDANEEPNNNSNTDKGGDGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKVDDRYKDDEEDHMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPHKVEKLAREILSDPIRVTVGEVGTANEDITQVVQVIPTDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQSSRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSPELMDLAMKDGRFRSKRDARKGGGGRKGKGRGGGASGKGVRGVDFGLGIGYSTEPNNPSSNTVPTRSGAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNTTSVAVNKRPTLAGFVSGGSIGGDINIHQQIASYNNPATSAANSTSQSSGVNPGQNSTNSISKPRERRRPSGWDR 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04838 777 CDD SF2_C_DEAD 448 580 - -
Trre13g04838 777 MobiDBLite consensus disorder prediction 738 777 - -
Trre13g04838 777 MobiDBLite consensus disorder prediction 655 671 - -
Trre13g04838 777 Pfam Helicase conserved C-terminal domain 463 570 IPR001650 -
Trre13g04838 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 610 IPR027417 -
Trre13g04838 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 439 IPR027417 -
Trre13g04838 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 610 IPR001650 -
Trre13g04838 777 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 190 610 - -
Trre13g04838 777 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 382 390 IPR000629 -
Trre13g04838 777 SMART ultradead3 249 451 IPR014001 -
Trre13g04838 777 Pfam DEAD/DEAH box helicase 254 425 IPR011545 GO:0003676|GO:0005524
Trre13g04838 777 MobiDBLite consensus disorder prediction 47 61 - -
Trre13g04838 777 FunFam probable ATP-dependent RNA helicase DDX17 192 439 - -
Trre13g04838 777 SMART helicmild6 489 570 IPR001650 -
Trre13g04838 777 CDD DEADc_DDX42 241 437 - -
Trre13g04838 777 MobiDBLite consensus disorder prediction 613 671 - -
Trre13g04838 777 MobiDBLite consensus disorder prediction 738 763 - -
Trre13g04838 777 MobiDBLite consensus disorder prediction 1 82 - -
Trre13g04838 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 436 IPR014001 -
Trre13g04838 777 Gene3D - 193 437 IPR027417 -
Trre13g04838 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 230 258 IPR014014 GO:0003724
Trre13g04838 777 Gene3D - 438 614 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04838 Trre-Chr13 54938753 54942521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04838 230 586 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 9.33e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04838 K12835 - gmx:100814854 1265.75