Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04837 ATGTTGAAAAAGGGCCAATGCTTATTGCTGAAATGGATGCTTATATTATCTTACCTGGTATTTATGATTGAGTCTGGTGTACATGAAAAAACTGTAGAAAATCCCCATGGGTTGAATTATGTGCTTTCTCATGGTGCTCCGGTTGTAACACTATCACCAGACAATCCTCCTTCATACAGTCCTTTCATAAATCCTGGCCAACCCCCAAAACGTTCACATTTTTCAATCCCATTCAAGAAGAGGGGTGAATGGAAACTCCCAATTTCTGGCTTTAAAAATATTGCTCCTATTCATTCAGCGGAAGCTGCAGTCCCTTCTGCTTTGACCCAGCCACCATTGACCCATCATGCTTCTAATTGTTGTAAACAAGACATGGTGTTGAAACGAGGCAGTAAGGGTTGCCACTGCGTATATCCCATAAAACTAGACATTCGTCTTTTGAATGTCACTCAGAATCCTGATTGGGATAAATTTCTTGAAGAATTTGCTACACAGCTAGGGTTGCAAAACAATACTCAGATTGACCTGATAAACTTTTATGTAGTCAACGTTTCATCATATAATATCTCAATGGATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGCTTCTAAAATAAACTCTTCACTTTTAATGCACAAGGTTCGATTAGACCCTGGACTAGTAGGTGGGTACAAACTTCTCAACTTGATCTGGTTTGAACCTCCACCTCCGACTCAAGCTCCTACTTTAACTGCATCGCCGGAGAAAGCACCTTTGTATCATTCACCTACAGCTACATCACCGAGTTCTTCAAACAAGGGAGGGCATTCAAATCTATTTCTTATTCTTGGAATTGCTATTGGCATGCTCTTCATTGCAATTGTATCTATATTAGTGTTCTGTTTATGCACCTTGCTGAAGAAGGAAAAAACACCCCCCATAGAAATTGAAAAGCCAAGGACAGAAAGTGCTATTTCAGCTGGGGGTTCTATTCCCCACCCAACCAGTACACGATTTATTGCTTTTGAAGAACTTAAAGAAGCAACGAACAACTTTGAACCTGCAAGTGTACTTGGAGAAGGAGGGTTTGGCAAAGTTTTTAAAGGTATCTTAAGTGATGGTACTTCTGTTGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGCCGAGGTGGAAATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATATTATAGTAATCGCGAGTCATCACAAAATCTACTTTGCTACGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCGTGGGAATAAATTGTCCATTGGATTGGGACACTAGAATGAAGATCGCTCTTGATGCTGCAAGAGGACTTTCGTACTTGCATGAAGACTCACAGCCGTGTGTAATACACAGAGATTTTAAGGCATCCAACATATTACTCGAGAACAATTTTCATGCCAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGTGGAGCTAATTATTTGTCTACTCGTGTCATGGGAACATTTGGGTATGTTGCTCCTGAGTATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTTTGCTAGAACTGCTCACTGGAAGGAAACCTGTGGATATGTCGCAGCCAAATGGGCAAGAGAACCTTGTTACTTGGGCGAGGCCAATCCTTAGAGATAAGGACCGGTTAGACGAGATTGCTGATCCGAAGCTTGGGGGAAAGTATCCAAAGGAAGATTTTGTGCGTGTGTGCACTATTGCAGCAGCATGTGTTGCTCCTGAAGCAAACCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATCACAGAATATCACGAGTCTGTGTTAGCCTCATCCAATACACAGACCAATCTTAGACAGTCGTCTAGCACTTTTGAGTTTGACGGAACATCTTCGGTGTTCTCTTCAGGCCCTTACTCTGGTCTAAGTGCTGCCTTTGACAATGAAAACATTTCTAGAACAGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 2085 0.4225 MLKKGQCLLLKWMLILSYLVFMIESGVHEKTVENPHGLNYVLSHGAPVVTLSPDNPPSYSPFINPGQPPKRSHFSIPFKKRGEWKLPISGFKNIAPIHSAEAAVPSALTQPPLTHHASNCCKQDMVLKRGSKGCHCVYPIKLDIRLLNVTQNPDWDKFLEEFATQLGLQNNTQIDLINFYVVNVSSYNISMDITPHKGISFSASEASKINSSLLMHKVRLDPGLVGGYKLLNLIWFEPPPPTQAPTLTASPEKAPLYHSPTATSPSSSNKGGHSNLFLILGIAIGMLFIAIVSILVFCLCTLLKKEKTPPIEIEKPRTESAISAGGSIPHPTSTRFIAFEELKEATNNFEPASVLGEGGFGKVFKGILSDGTSVAIKRLTSGGQQGDKEFLAEVEMLSRLHHRNLVKLVGYYSNRESSQNLLCYELVPNGSLEAWLHGPVGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGGANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPNGQENLVTWARPILRDKDRLDEIADPKLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRITEYHESVLASSNTQTNLRQSSSTFEFDGTSSVFSSGPYSGLSAAFDNENISRTVVFSEDLHEGR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04837 694 PANTHER OS01G0750732 PROTEIN 114 647 - -
Trre13g04837 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Trre13g04837 694 CDD STKc_IRAK 355 625 - -
Trre13g04837 694 Gene3D Phosphorylase Kinase; domain 1 317 426 - -
Trre13g04837 694 Pfam Protein tyrosine and serine/threonine kinase 353 624 IPR001245 GO:0004672|GO:0006468
Trre13g04837 694 Gene3D Transferase(Phosphotransferase) domain 1 427 649 - -
Trre13g04837 694 MobiDBLite consensus disorder prediction 244 270 - -
Trre13g04837 694 FunFam Receptor-like serine/threonine-protein kinase ALE2 427 645 - -
Trre13g04837 694 FunFam Receptor-like serine/threonine-protein kinase ALE2 329 426 - -
Trre13g04837 694 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre13g04837 694 SUPERFAMILY Protein kinase-like (PK-like) 326 626 IPR011009 -
Trre13g04837 694 ProSiteProfiles Protein kinase domain profile. 349 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04837 Trre-Chr13 54922464 54926059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04837 46 694 Receptor kinase-like Gene Family AT4G02010 71.319 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre13g04837 Pkinase 4.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04837 - - gmx:100793528 1133.24