Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04834 ATGGTAGATTCTGGTGGTGTTCTTCATGAATTTATAGAAGTTGACAATTTTAAAGATGATGGTGTCGGCGTCACATGTTGGGAGCCTGAAATGGATATGTGTTTTTCTTCTATGGATGATGCTAAATCTTTTTATGGAGAGTATGCTATGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAAAAAAGGACAAGATGGAAAAATATGCTACATTATACTAGCATGCACAAGAGAGGGGTCTAAAGTCTCAAAGGTTCAACCTACATTGAAGACACTTCCAACAAGGATGAATTGTTGTCCTGCTAAGATTTGTATTAAGATGGAAAAGGATGGATTGTGGTACTTCAAAAAATTTAATCCCGAACATTCTCACGAGATCATCCCTACAAATGCAAGGTTGTTCAAGGCTAACAAGAAAATGAAGAGGACTATTAAAATCAATGATGATGCGGGTAGGCATGAAAATATATTGTTTTGTGAAAGAGATGTAAAGAGTTATGTTAACCAGGAACGTCGTGCAATTGGAAAAGAAGATCAGTTTAATTCTAATTTGCCACATTCGATGGAGGTGTAA 576 0.3646 MVDSGGVLHEFIEVDNFKDDGVGVTCWEPEMDMCFSSMDDAKSFYGEYAMRKGFGWKIRTSKKGQDGKICYIILACTREGSKVSKVQPTLKTLPTRMNCCPAKICIKMEKDGLWYFKKFNPEHSHEIIPTNARLFKANKKMKRTIKINDDAGRHENILFCERDVKSYVNQERRAIGKEDQFNSNLPHSMEV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04834 191 Pfam FAR1 DNA-binding domain 43 128 IPR004330 -
Trre13g04834 191 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 21 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04834 Trre-Chr13 54912687 54914585 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre13g04834 FAR1 5.5e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04834 - - cam:101513893 239.58