Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04833 ATGGATAGTTCAAATAATATGGTAGATTCTGGTGGTGTTCTTCATGAATTTATAGAAGTTGACAATTTTAAAGATGATGGTGTCGGCGTCACATGTTGGGAGCCTGAAATGGATATGTGTTTTTCTTCTATGGATGATGCTAAATCTTTTTATGGAGAGTATGCTATGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAAAAAAGGACAAGATGGAAAAATATGCTACATTATACTAGCATGCACAAGAGAGGGGTCTAAAGTCTCAAAGGTTCAACCTACATTGAAGACACTTCCAACAAGGATGAATTGTTGTCCTGCTAAGATTTGTATTAAGATGGAAAAGGATGGATTGTGGTACTTCAAAAAATTTAATCCCGAACATTCTCACGAGATCATCCCTACAAATGCAAGGTTGTTCAAGGCTAACAAGAAAATGAAGAGGACTATTAAAATCAATGATGATGCGGGTAGGCATGAAAATATATTGTTTTGTGAAAGAGATGTAAAGAGTTATGTTAACCAGGAACGTCGTGCAATTGGAAAAGAAGATCAGTTTAATTCTAATTTGCCACATTCGATGGAGGTGTAA 594 0.3603 MDSSNNMVDSGGVLHEFIEVDNFKDDGVGVTCWEPEMDMCFSSMDDAKSFYGEYAMRKGFGWKIRTSKKGQDGKICYIILACTREGSKVSKVQPTLKTLPTRMNCCPAKICIKMEKDGLWYFKKFNPEHSHEIIPTNARLFKANKKMKRTIKINDDAGRHENILFCERDVKSYVNQERRAIGKEDQFNSNLPHSMEV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04833 197 Pfam FAR1 DNA-binding domain 49 134 IPR004330 -
Trre13g04833 197 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 26 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04833 Trre-Chr13 54912669 54914585 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre13g04833 FAR1 5.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04833 - - cam:101513893 239.58