Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04830 ATGGAAAGTGTCAGTAATGCCTCCCCCCAACTTGAGTCAGAAGCATCTAATTCAGAACTCAAACAAGAATCTCAAGCATTCAAGAAGCGTAAAATGGTTGAGAAAACAGTTGTAACTGTGAGAATAGGAGAGAATGTTAGCAAGCTGAAGAATGAAGGGCTTCCTTCAGATTTTTGGTCATGGAGGAAATATGGACAAAAGCCAATCAAAGGATCTCCATATCCAAGGGGATATTATAGGTGCAGCACAACAAAGGGTTGTTCAGCCAAAAAGCAAGTAGAGAGAAGTAGCACAGATGCTTCAATGCTCATCATCACCTATACTTCAAAACACAACCATCCAGATCCTACTGCCGTCTCCGCCACAAACTCAGCTCAACAACCAAAAGAATCCGAAACCGAAACAATCAAAGATCTCCCTGTTACCTCCAACGAAGAAGACCAAGAACATTTCGTCGAGGAAATGATTAATAATAACAGCATTGTTATGACTAGTACTGATCAAGTTACAAATGAAGAAAATTTTCATTACTTGCAATCACCAATACACTGCTCCGAAGATCCTTTCAAACTGAACATAGAAAAAAACAATATTGACAAAATAGATATTCTCTTAGAAGAAGAACCACTTTGCTATGGACAGTTAAAGAATTTGACAGAATCTAAATCAGAAGAACTTGATTTTTTCGATGAGCTTGAGGAGTTACCTATGTCTTCATCTATTTTACATTTTACTAGGAGCATTTTTTCTGATGAAAGGATTCCTGTTGCTCCTTCTTGA 780 0.3782 MESVSNASPQLESEASNSELKQESQAFKKRKMVEKTVVTVRIGENVSKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTTKGCSAKKQVERSSTDASMLIITYTSKHNHPDPTAVSATNSAQQPKESETETIKDLPVTSNEEDQEHFVEEMINNNSIVMTSTDQVTNEENFHYLQSPIHCSEDPFKLNIEKNNIDKIDILLEEEPLCYGQLKNLTESKSEELDFFDELEELPMSSSILHFTRSIFSDERIPVAPS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04830 259 SUPERFAMILY WRKY DNA-binding domain 52 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04830 259 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04830 259 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g04830 259 FunFam WRKY transcription factor 65 38 116 - -
Trre13g04830 259 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04830 259 Gene3D WRKY domain 41 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g04830 259 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g04830 259 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g04830 259 MobiDBLite consensus disorder prediction 110 130 - -
Trre13g04830 259 MobiDBLite consensus disorder prediction 110 135 - -
Trre13g04830 259 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 239 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04830 Trre-Chr13 54901325 54903815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04830 26 121 WRKY Transcription Factor Family AT2G34830 62.887 2.08e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g04830 WRKY 6.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04830 - - gmx:100127368 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04830 13 54901325 54903815 Trre13g04830 13 54901325 54903815 ECH