Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04828 ATGGAAATCAACCATTTTTCTTCCACTCATCACTCTCTAGAACAATTTCTGTTTCAAGAGATTCATAATAATAATCAGAAACAACAAGAACAAGAATTCCAAGTTGTTGATAACTTCATGTCACTAGAAGATATCAACTTCAACCATTGTCAACAAAACAATCATCAAAACAAAGTTTCAATTCCAAAACCTTTACAAAACAAGATGCCATTGTCTTTATCATCTTTAGAGATTCTGAGAAATCATGGAAGTAGATTCAACAAGAAAAATATAGTCACTAAAACTTCTTCAAATTTGGAACATCATCAAATGATGTCAACAGAAGAAATAATAAGAGTAGCTGGAGCAAGGTATACTCAATACTCTTCATCTCATTGGAGTGAAAATATTTGCATCCAAACACACCCTTATGGATTTGATTTTCATGGTTTAACTGAAGAACAAAATAGAGACATTGAACTTGCACAGTTTCTATTTTCAGCAGCTGAAAGAGTAAGTTTTCAACAATTTGAACGTGCAAAAAAATTACTTTTTTATTGTCAATGGAATTCATCTATCACAGGAAACTCTGTTCAAAGAATTGTTTTTTATTTTTCTCAAGCACTTCTAGAGAGAATAGAGAAAAAATCAGGAAGAGTGATTAAAGGGTCAGAGAAAAATGAAGAAATTGAATTAATTCAAAATATGGATCCACAAAAAGCACTTTCTTGTCATCAAAAAATTCCTTTTAATCAAGTTATGCAATTCACTGGTATACAAGCTATAGTTGAACATGTTATGTTCGAGACGAAAATCCATCTAATAGATCTTAATATAAAAAGTGGAGTTCAATGTATAACTTTGATGCAAGCTTTAGCTGATAGAAAAGATTGCATGGTTGAGATTTTTAAGGTAACTGCTATTGGAGTGAATTCATGCAAGAACAGGATTGAAGAAACCGGTAAAAATTTAGCGAGTTTCGCATTATCGTTGAACTTTCCTTTTTTATTTAAGGCTGTTTTAGTAGAAGACATGTTGGAAATCAAAGAAGATGATTTCGAAATCGAAGAGGACGAAGCTGTCGCTATTTACTCTCCGTATTATCTAAGGACTTTGATATCGAAGCAAGATAGTATGGAAAATTTGATGAGGGTTATAAGGTGTATCAAACCATCTATAATGATTGTTCTTGAAATTGAAGCAAGTCATAATTCGCCGTCTTTTGTGAACCGGTTTGTGGAAGCGTTGTTTCACTACTCGGCTTTTTTCGATATACTTGAAACGTGTATGAAAGAGGAGGATGAGTGTAGAATGATGACAGAAGGAATACTATCAGCAGGGATAAGAAATATTGTTGCAACAGAAGGTAGTGAAAGGAATGTTAGAAATGTGAAAATTGATGTTTGGAGAAAGTTTTTTGCAAGATATAGAATGGTTGAAACTAGGTTTAGTGAGGCTTGTAATTACCAAGCTGAATTAGTGGTTAAAAAGTTTGATTATGGGGATTTTTGTAATGTGGAAAAGAATGGGAAGTGTTTGATTTTGGGATGGAGAGGGACTCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTTGA 1575 0.3302 MEINHFSSTHHSLEQFLFQEIHNNNQKQQEQEFQVVDNFMSLEDINFNHCQQNNHQNKVSIPKPLQNKMPLSLSSLEILRNHGSRFNKKNIVTKTSSNLEHHQMMSTEEIIRVAGARYTQYSSSHWSENICIQTHPYGFDFHGLTEEQNRDIELAQFLFSAAERVSFQQFERAKKLLFYCQWNSSITGNSVQRIVFYFSQALLERIEKKSGRVIKGSEKNEEIELIQNMDPQKALSCHQKIPFNQVMQFTGIQAIVEHVMFETKIHLIDLNIKSGVQCITLMQALADRKDCMVEIFKVTAIGVNSCKNRIEETGKNLASFALSLNFPFLFKAVLVEDMLEIKEDDFEIEEDEAVAIYSPYYLRTLISKQDSMENLMRVIRCIKPSIMIVLEIEASHNSPSFVNRFVEALFHYSAFFDILETCMKEEDECRMMTEGILSAGIRNIVATEGSERNVRNVKIDVWRKFFARYRMVETRFSEACNYQAELVVKKFDYGDFCNVEKNGKCLILGWRGTPMHSISAWRFL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04828 524 ProSiteProfiles GRAS family profile. 145 522 IPR005202 -
Trre13g04828 524 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 103 515 IPR005202 -
Trre13g04828 524 Pfam GRAS domain family 155 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04828 Trre-Chr13 54886242 54887816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04828 144 523 GRAS Transcription Factor Family AT3G03450 30.233 5.30e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g04828 GRAS 5.1e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04828 - - gmx:100791952 600.512