Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04824 ATGGTCATTTTATCACTTCCTCTGACTCACCTTGCTCAGCGCAAAGTTAATGACGTGGAAAGTCAGAGGAAACGAAAATCTTCAAGATGCAATTGTAGTGCAAAGATGTTGGTTATTAATAGAACAATTGGTTTTAAAGAAAAGTGGGTGGTTAACTATTTCAATAATCACCACAATCATGAGTTATTAGATGATAAGGAGGTCCAATTTCTTCCTGCTTATCGTAAAATCTCAATCGTAGATCAAAATCGTATACACTTGTTATCAAAAATTGGTTGCCCTGTGAGTCTCATAATGAGAGTGCTGGAGTTAGAGAAAGGAATAAATACAGGCAACCTACCTCTTTTGAAGAAAGATATTAGAAATTTTATTCAATCTCACAGTGGTATTGGTCATGCTTCAAATGTTCTCAAATTATGCAAAAGTTTGAAAGATTTTGTAAATCAAGTTGGTGTTGCCGTCAAAATTAGAAATCAAGTAGGAGAAGAGGCAAGAATGCGTCAAAAGTACCATAACCCTATATTCAGAACAAGTTTTCCTATTGAGGAACATGTGGCATCTATACTCACGCCATATGCATTTGGGTAG 588 0.3554 MVILSLPLTHLAQRKVNDVESQRKRKSSRCNCSAKMLVINRTIGFKEKWVVNYFNNHHNHELLDDKEVQFLPAYRKISIVDQNRIHLLSKIGCPVSLIMRVLELEKGINTGNLPLLKKDIRNFIQSHSGIGHASNVLKLCKSLKDFVNQVGVAVKIRNQVGEEARMRQKYHNPIFRTSFPIEEHVASILTPYAFG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04824 195 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 122 - -
Trre13g04824 195 Pfam FAR1 DNA-binding domain 14 63 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04824 Trre-Chr13 54868811 54870175 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre13g04824 FAR1 1.8e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04824 - - tpra:123922871 205.297