Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04822 ATGGATCCACAAAAAGCACTTTCTTGTCATCAAAAAATTCCTTTTAATCAAGTTATGCAATTCACTGGTATACAAGCTATAGTTGAACATGTTATGTTCGAGACGAAAATCCATCTAATAGATCTTAATATAAAAAGTGGAGTTCAATGTATAACTTTGATGCAAGCTTTAGCTGATAGAAAAGATTGCATGGTTGAGATTTTTAAGGTAACTGCTATTGGAGTGAATTCATGCAAGAACAGGATTGAAGAAACCGGTAAAAATTTAGCGAGTTTCGCATTATCGTTGAACTTTCCTTTTTTATTTAAGGCTGTTTTAGTAGAAGACATGTTGGAAATCAAAGAAGATGATTTCGAAATCGAAGAGGACGAAGCTGTCGCTATTTACTCTCCGTATTATCTAAGGACTTTGATATCGAAGCAAGATAGTATGGAAAATTTGATGAGGGTTATAAGGTGTATCAAACCATCTATAATGATTGTTCTTGAAATTGAAGCAAGTCATAATTCGCCGTCTTTTGTGAACCGGTTTGTGGAAGCGTTGTTTCACTACTCGGCTTTTTTCGATATACTTGAAACGTGTATGAAAGAGGAGGATGAGTGTAGAATGATGACAGAAGGAATACTATCAGCAGGGATAAGAAATATTGTTGCAACAGAAGGTAGTGAAAGGAATGTTAGAAATGTGAAAATTGATGTTTGGAGAAAGTTTTTTGCAAGATATAGAATGGTTGAAACTAGGTTTAGTGAGGCTTGTAATTACCAAGCTGAATTAGTGGTTAAAAAGTTTGATTATGGGGATTTTTGTAATGTGGAAAAGAATGGGAAGTGTTTGATTTTGGGATGGAGAGGGACTCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTTGA 891 0.349 MDPQKALSCHQKIPFNQVMQFTGIQAIVEHVMFETKIHLIDLNIKSGVQCITLMQALADRKDCMVEIFKVTAIGVNSCKNRIEETGKNLASFALSLNFPFLFKAVLVEDMLEIKEDDFEIEEDEAVAIYSPYYLRTLISKQDSMENLMRVIRCIKPSIMIVLEIEASHNSPSFVNRFVEALFHYSAFFDILETCMKEEDECRMMTEGILSAGIRNIVATEGSERNVRNVKIDVWRKFFARYRMVETRFSEACNYQAELVVKKFDYGDFCNVEKNGKCLILGWRGTPMHSISAWRFL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04822 296 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 287 IPR005202 -
Trre13g04822 296 ProSiteProfiles GRAS family profile. 1 294 IPR005202 -
Trre13g04822 296 Pfam GRAS domain family 11 294 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04822 Trre-Chr13 54852300 54853190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04822 10 295 GRAS Transcription Factor Family AT3G03450 33.910 1.21e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g04822 GRAS 2.1e-68 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04822 - - gmx:102663581 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04822 13 54852300 54853190 Trre13g04822 13 54852300 54853190 ECH