Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04821 ATGGTCTCAAATTCCCCAGGCTCTGCCATTGGATCTCAAGAGAAACATGGAGGGGGATCATCAAACACTCGTCAAACTTTGGGGAACAAAATAAATCTGTTGAAAAAGCAAATCCAAAAGGAACGAGTTGAATCAATTAAAGAAAAGATTCAAAGAAATGGGAAGAATCTCAAATGTCAACTTTCTGAGGTCATGTTAGTTATATCAAGAAATGAATCATTACAAAGTGAGGAAAATACTCTTAATATGCTTTCTTCAAGAATGAATCATCCTCAGCGTAAGTTCAATGGTTGCATCGCTCGAGTTTCGGTAGAAGGTGACCAAATCAACAATCCAGATGCATCATTAGTGAAAAGTGTAAAGATGGAATACATCAAAAGGTTGCCTCCATTTACATTTTGGACAAATTTAACAAGAAATGAATTAATGACTGAAGATCAATCTGTTTTTAGAACAAGATATATAAATTATGATCATCATGGAGGTGAAACATTAATAACCGGTATCAGTGATACCGAGGAAGAGCCGAAAGAGCCAGAAGAGCCAAAAGAGCATAAGAAAGTTAAACGCGACTTTTCTGAAGGTGAAGACAGATTTCTAAGGATGGTATTTGAAGAACATGATTTAACTGAGGAGGTTTTGAGCATTGTAAGCGATATTATCGGGGGTACCAGTTCAGAAATTAAGGAGAGGTATGAACATATCAAGGAAAAGGAACGACGAAATTCTGAAGATTATGGAGAAAGTGGATCTCACATTGAGAGATGTATGAATAAAAGTTTGAGCGTAACTTTAGATGGTTTCGACCACCTTTTATGTCGCCAGTGCATGATCTTTGATTGTTCTGTGCACGGATGCTCTCAAAAGTTTATATATCCAAATGAAAAGCAAAATGTTTGGTCAGAACCAGAAGATGACGGAAAACCATGCGGTGATTATTGTCACCTTAATAATATAGATGCTACAATTAGTGATTCTACGAGGGGCCTAAATTTGGATGCTGCTTGCAATGAAGAACAACATGTAATGGATGAAACGGAATTGAATCAAATGTCTAACTCAATGGAAGGACAAATTGAGGAGGATTCTAGTGTTTCAGATTGGAAACCTTTGGAGGTAGAACTATATCAGAAGGGAAAAGAAATGTTTGGGAGAAACAGTTGCCTTATATCTCGGAACTTACTTGCTGGATTGAGGACTTGCGAGGAAGTTGCTAGATACATGTATGCTGAAGCGTCAATGCCGCATGGATCCATGGAAGAAAATGGACAATTTGATGCAATGTCCACTGACAATAATACGCCATCAAGGCCGCGGAAGGTGCCAAGAAAGAACAAAGCTAAGAGGTTCTCTTCAAAAGCCGCGGGACTTCCGTCTACATGGAAACAAGTTATTGATGCAGGGAATAAAAGAAAATATAAGCAGTATACACCTTGTGAATGTAAAGGAACGTGTGGAAAACAATGTTCATGTCTTGTTGGTGGATATTTCTGTGAAAAATATTGTGGGTGTTCAATGCTTTGTAGAAATCGATTTGGAGGATGTCATTGTAATAAGACTCATTGTAGAAGTAGGCATTGTCCATGCTTTGCAGCATTAAGAGAATGTGATCCAGATGTATGTAAAAATTGTTGGGTTAGTTGTGGTGATGGTTCATTAGGAGAGTCATCTCATCGTGCAGAGGGTCAATGTGAAAATATGAATATGCTTTTAGGGAAAAAGAAACATAAGATTCTTTGGGGAAGGTCTGATATTACTGGATGGGGAGCATTCTTAAAGAACCCTGCAAACAAAAATGATTTTCTAGGAGAGTACACAGGTGAACTAGTCTCTAACGTAGAAGCTGAGAAACGTGGAAGTTTTTATGATCGTACAGGCTTTTCATCTTACCTTTTCAACTTGAATGATACGTATTGTCTTGATGCTTATCGCAAAGGAAACAAGTTGAAATTTGCAAATCACTCATTAACCCCCAATTGCTATGCAAGGGTTATGCTTGTTGGTGGGGACCATCGAGTAGGAATATATGCAATGGAAGACATTAAGGCTGGTGAGGAGATTCTCTATCATTACCACTACAATGAGGAGCAAAAGCAACCACCATGGCTTCTTAAGCTTTTAGATGAAGCTTCTTCCAAGAAAAATAATGATCCAACATATTCTCAAGGAAAAGGCAAAAAACCCCAGTCTCATTGA 2196 0.3807 MVSNSPGSAIGSQEKHGGGSSNTRQTLGNKINLLKKQIQKERVESIKEKIQRNGKNLKCQLSEVMLVISRNESLQSEENTLNMLSSRMNHPQRKFNGCIARVSVEGDQINNPDASLVKSVKMEYIKRLPPFTFWTNLTRNELMTEDQSVFRTRYINYDHHGGETLITGISDTEEEPKEPEEPKEHKKVKRDFSEGEDRFLRMVFEEHDLTEEVLSIVSDIIGGTSSEIKERYEHIKEKERRNSEDYGESGSHIERCMNKSLSVTLDGFDHLLCRQCMIFDCSVHGCSQKFIYPNEKQNVWSEPEDDGKPCGDYCHLNNIDATISDSTRGLNLDAACNEEQHVMDETELNQMSNSMEGQIEEDSSVSDWKPLEVELYQKGKEMFGRNSCLISRNLLAGLRTCEEVARYMYAEASMPHGSMEENGQFDAMSTDNNTPSRPRKVPRKNKAKRFSSKAAGLPSTWKQVIDAGNKRKYKQYTPCECKGTCGKQCSCLVGGYFCEKYCGCSMLCRNRFGGCHCNKTHCRSRHCPCFAALRECDPDVCKNCWVSCGDGSLGESSHRAEGQCENMNMLLGKKKHKILWGRSDITGWGAFLKNPANKNDFLGEYTGELVSNVEAEKRGSFYDRTGFSSYLFNLNDTYCLDAYRKGNKLKFANHSLTPNCYARVMLVGGDHRVGIYAMEDIKAGEEILYHYHYNEEQKQPPWLLKLLDEASSKKNNDPTYSQGKGKKPQSH 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04821 731 CDD SET_EZH 576 693 - -
Trre13g04821 731 Pfam CXC domain 514 545 IPR041355 -
Trre13g04821 731 ProSiteProfiles SET domain profile. 576 692 IPR001214 GO:0005515
Trre13g04821 731 ProSiteProfiles CXC domain profile. 447 561 IPR026489 -
Trre13g04821 731 Coils Coil 24 44 - -
Trre13g04821 731 Gene3D SET domain 476 694 IPR046341 -
Trre13g04821 731 Pfam SET domain 587 691 IPR001214 GO:0005515
Trre13g04821 731 SMART set_7 576 698 IPR001214 GO:0005515
Trre13g04821 731 FunFam Putative histone-lysine N-methyltransferase EZH2 476 694 - -
Trre13g04821 731 MobiDBLite consensus disorder prediction 418 449 - -
Trre13g04821 731 MobiDBLite consensus disorder prediction 171 190 - -
Trre13g04821 731 SUPERFAMILY SET domain 470 699 IPR046341 -
Trre13g04821 731 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g04821 731 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 340 709 IPR045318 GO:0006338|GO:0042054
Trre13g04821 731 SMART CXC_2 515 547 IPR033467 -
Trre13g04821 731 SMART CXC_2 474 514 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04821 Trre-Chr13 54844278 54849776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04821 564 691 C2H2 Transcription Factor Family AT2G23740 32.414 1.79e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g04821 SET 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04821 - - cam:101494145 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04821 13 54844278 54849776 Trre13g04821 13 54844278 54849776 ECH
Trre13g04821 13 54844278 54849776 Trre1g04456 1 50441337 50450017 PCT