Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04816 ATGGCTTCGATTCAACGTCCGGCGAGTTCGGGATCCGACGGCGGAGATCTACAATCCGGAACAATCGACGAGAGGAAAAGGAAGAGGATGCTTTCGAACCGTGAATCCGCTAGACGATCGCGGATGAGGAAACAAAAGCAGTTGGAGGATCTGAGCGATGAAGCGAACAGGTTGCAAATCGAGAACAAGAAACTGTTGGAGAACATTAAAGCGAAGGAAGAAGCATGCATTGAAAACGAAGCTGCTAATGGCGTTCTCAGAGCTCAAACTATGGAATTAACAGATCGATTACGGTTTCTTAACTCGATCCTTGAAATTGCTGAAGAAGTTAGCGGATTTTCTGTTGAGATTCCTGAAATTCCGGATCCTTTACTTAAACCCTGGCAGATTCATCATCCGATTCATCCGATTATGGCGTCTGCAGATATGTTCTTGCATTGA 441 0.4535 MASIQRPASSGSDGGDLQSGTIDERKRKRMLSNRESARRSRMRKQKQLEDLSDEANRLQIENKKLLENIKAKEEACIENEAANGVLRAQTMELTDRLRFLNSILEIAEEVSGFSVEIPEIPDPLLKPWQIHHPIHPIMASADMFLH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04816 146 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 70 IPR004827 GO:0003700|GO:0006355
Trre13g04816 146 MobiDBLite consensus disorder prediction 19 51 - -
Trre13g04816 146 MobiDBLite consensus disorder prediction 1 17 - -
Trre13g04816 146 Gene3D - 23 80 - -
Trre13g04816 146 Coils Coil 34 75 - -
Trre13g04816 146 PANTHER BZIP TRANSCRIPTION FACTOR 44 6 142 - -
Trre13g04816 146 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Trre13g04816 146 FunFam BZIP transcription factor 23 74 - -
Trre13g04816 146 MobiDBLite consensus disorder prediction 1 51 - -
Trre13g04816 146 SUPERFAMILY Leucine zipper domain 25 73 IPR046347 GO:0003700|GO:0006355
Trre13g04816 146 CDD bZIP_plant_GBF1 26 76 IPR045314 GO:0003700|GO:0006355
Trre13g04816 146 Pfam bZIP transcription factor 25 76 IPR004827 GO:0003700|GO:0006355
Trre13g04816 146 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04816 Trre-Chr13 54810472 54810912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04816 1 144 bZIP Transcription Factor Family AT3G62420 55.556 1.31e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g04816 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04816 K25786 - gmx:780550 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04816 13 54810472 54810912 Trre13g04816 13 54810472 54810912 ECH
Trre13g04816 13 54810472 54810912 Trre1g04460 1 50470016 50470441 PCT