Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04812 ATGGAAGAAATTGTCTTGCTAGTCGATGATTTGAGGTTACTTTCTGGAATTTCTCACTGTAGAATATGTCATGAAGAAGAATTTGAAAGCTCCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGTAATGAAAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAAGTCCTCCTCCTAAGAAGTCAGAGATAAATGATGAAGCAATGTCCATTAGGGATGAGGAAGAACCTTCGGACACAAGAAGAGAAAATGTGGTGGAAGGAATTGTAATAGAAAGTGATTGCAGTTCTACAGCTGACAGGACCGCGTCTCATTGTCGATCACTTGCATTAGCTTTTACAATTGTGTTACTAGTAAGACATTGTTTGGTTGTTCCTACAAGTGGAGCGGAAGATTACCCATTTACACTTTTTACCGTCATCATACTAAAGGCTTGTGGAATTATTATACCCATGTACATAGTTACCAAGACAATCGGAGTCATTCTGAATAGCATTCGGCGCTATAGAGGTTCTGACTACGATACATCATTTTCTGATGAAGATGGCAGAAATGAAGAAAATGTAATATATTCGTAG 642 0.3801 MEEIVLLVDDLRLLSGISHCRICHEEEFESSKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTSPPPKKSEINDEAMSIRDEEEPSDTRRENVVEGIVIESDCSSTADRTASHCRSLALAFTIVLLVRHCLVVPTSGAEDYPFTLFTVIILKACGIIIPMYIVTKTIGVILNSIRRYRGSDYDTSFSDEDGRNEENVIYS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04812 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Trre13g04812 213 MobiDBLite consensus disorder prediction 77 103 - -
Trre13g04812 213 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Trre13g04812 213 Pfam Protein of unknown function (DUF3675) 73 180 IPR022143 -
Trre13g04812 213 CDD RING_CH-C4HC3_MARCH 20 67 - -
Trre13g04812 213 SUPERFAMILY RING/U-box 18 72 - -
Trre13g04812 213 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Trre13g04812 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 189 IPR033275 -
Trre13g04812 213 SMART ringv_2 19 68 IPR011016 GO:0008270
Trre13g04812 213 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Trre13g04812 213 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04812 Trre-Chr13 54775360 54778846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04812 20 67 C3H Transcription Factor Family AT2G37950 44.898 5.78e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04812 - - mtr:11420992 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04812 13 54775360 54778846 Trre13g04812 13 54775360 54778846 ECH
Trre13g04812 13 54775360 54778846 Trre1g04465 1 50517686 50523105 PCT