Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04797 ATGGCGCATCGAAGAGCCAAATTACTGTTCCTTCTCTGCGCTATTTGCTATTCTCTCAATGCCATTGCCGCAAAGAGCTATTACGATATACTTCAACTGTCGAAAGGTGCATCGGATGATCAGATTAAGAGAGCGTATAGGAAGCTTGCATTGAAGTATCATCCTGATAAGAATCAGGGAAATGAAGAAGCTACTAAGAAATTTGCCGAGATTAGCAATGCTTATGAAGTATTGTCGGATAACGAGAAGAGAAATATTTACGATAAGTATGGTGAAGAGGGATTGAAGCAGCATGCTGCTGGTGGAGGAAGAGGAGGTGGAATGAACATGCAGGATATTTTTAACTCTTTCTTTGGTGGGGGATCAATGGAGGAAGAGGAGAAAATTGTAAAAGGTGACGACGTTATTGTTGATTTGGATGCAACTCTTGAAGATTTGTACATGGGCGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTGTAAAGCCAGCACCTGGAAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGACCAATGTGCTAATGTCAAATACGTAAGGGAGGGATATTTCGTCACTGTTGATATTGAGAAAGGCATGCAAGATGGCCAGGAGGTGCTATTTTATGAGGATGGTGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACCGCACCTCATGAACTTTTCAGAAGGGAAGGCAATGACTTACATACCACTGTCACTATAACCCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCGTTAAACACCTTGATGAACATCTAGTGGACATAAGCGCCAAGGGAATCACGAATCCAAAGCAAGTAAGGAAGTTCAAAGGCGAGGGAATGCCGTTGCATATGAGCACGAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTTTGTTCCCCACGTCACTAACAGAAGAGCAGAAAACAAATATAAAAGCAATTCTTGGTTAG 1032 0.4244 MAHRRAKLLFLLCAICYSLNAIAAKSYYDILQLSKGASDDQIKRAYRKLALKYHPDKNQGNEEATKKFAEISNAYEVLSDNEKRNIYDKYGEEGLKQHAAGGGRGGGMNMQDIFNSFFGGGSMEEEEKIVKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCDQCANVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHELFRREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISAKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLTEEQKTNIKAILG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04797 343 Gene3D - 127 248 - -
Trre13g04797 343 CDD DnaJ_C 133 330 - -
Trre13g04797 343 Coils Coil 61 81 - -
Trre13g04797 343 FunFam DnaJ subfamily B member 11 248 343 - -
Trre13g04797 343 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 5 342 - -
Trre13g04797 343 SMART dnaj_3 25 83 IPR001623 -
Trre13g04797 343 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Trre13g04797 343 Gene3D - 249 327 - -
Trre13g04797 343 CDD DnaJ 27 80 IPR001623 -
Trre13g04797 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 336 IPR008971 GO:0006457|GO:0051082
Trre13g04797 343 Pfam DnaJ C terminal domain 137 327 IPR002939 -
Trre13g04797 343 Gene3D DnaJ domain 23 126 IPR036869 -
Trre13g04797 343 FunFam DnaJ protein ERDJ3B 23 127 - -
Trre13g04797 343 PRINTS DnaJ domain signature 46 61 IPR001623 -
Trre13g04797 343 PRINTS DnaJ domain signature 83 102 IPR001623 -
Trre13g04797 343 PRINTS DnaJ domain signature 28 46 IPR001623 -
Trre13g04797 343 PRINTS DnaJ domain signature 63 83 IPR001623 -
Trre13g04797 343 SUPERFAMILY Chaperone J-domain 22 122 IPR036869 -
Trre13g04797 343 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Trre13g04797 343 Pfam DnaJ domain 27 88 IPR001623 -
Trre13g04797 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 130 255 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04797 Trre-Chr13 54614682 54619596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04797 25 90 C2H2 Transcription Factor Family AT1G74250 43.662 1.71e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04797 K09517 - gmx:100807885 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04797 13 54614682 54619596 Trre13g04797 13 54614682 54619596 ECH