Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04796 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAGGGAAGGTGGACTGCAGAAGAGGATGAAATTTTGACCCAATATGTTAAGACCAATGGAGAAGGTTCTTGGAGGTCATTACCTAAAAATGCAGGATTACTTAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAACTATTTGAGAGCTGATCTCAAAAGGGGAAATATTTCTTCTGAAGAGGAAAATATTATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCATTTACCAGGCAGAACAGACAACGAGATTAAAAACTATTGGAACTCTCACTTGAGTAGAAAAGTTTACAGCTTCAAAGGAACAGCAACAAATTATGATAATAATATTTCCAATAATTCTAAAGAGATACCCTTGCAACAAGGGAATGTAGTTGACACACCTCCCAAACGTAGAGGTGGTAGAACTAGTAGGTGGGCCATGAAGAAGAATAAACGCTATGCCCAAAATATTTCCAAAAGTCCAAAATTACAAATAAGTGAAGCTGCTGCAATTACACTTCCACCCACCCCTACACTTGAGAGTGAGAAATTGTCTACAAGGATAATAAAGGAATTCATGGTTATGGACCCTGAAAATGGACCGTCTTCTAGTGGCGAAGACAGCCCAAGTGGATCGCATTTACCGTGCATTGACGGTAAAGATATTGAAACTGATCGCGACCAAATGTTGGGACCGTATCCAAAGGTCGACATTAATGACGGCGAGGTGGATTTTAATGATATTGTTATGGACACTTGTGAGGTGGAAGAAGAAAAAAAAAATAATGATGAAAATGTGGTTGTGAATAATGAAAGAGTGGTGGGGGACAAAGGCACTAACACAAATGGAACAAGGGACCTAGAGAGTAATAGTAATATGGCAAATTATGGTACGAATGAGGAGTTAAATTCTTCTTCAATGCCTTTGGATTTGGATGATAATTTAGATTGGGAGAGTGTGATGCCTTTGTTGAATCAGAAAGGACAATCATTGTCATGGGATCAAAGTGAAAACATGCTAGCTTGGTTATGGGATGATGATGAATGGGAAAAAGATTTTCAGAAATTGCGAGAGATTGACCCTCAGAAGCAAAATGCTATGGTTTCTTGGTTTTTGTCTTGA 1164 0.3883 MGRAPCCEKVGLKKGRWTAEEDEILTQYVKTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISSEEENIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFKGTATNYDNNISNNSKEIPLQQGNVVDTPPKRRGGRTSRWAMKKNKRYAQNISKSPKLQISEAAAITLPPTPTLESEKLSTRIIKEFMVMDPENGPSSSGEDSPSGSHLPCIDGKDIETDRDQMLGPYPKVDINDGEVDFNDIVMDTCEVEEEKKNNDENVVVNNERVVGDKGTNTNGTRDLESNSNMANYGTNEELNSSSMPLDLDDNLDWESVMPLLNQKGQSLSWDQSENMLAWLWDDDEWEKDFQKLREIDPQKQNAMVSWFLS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04796 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre13g04796 387 FunFam Myb transcription factor 71 116 - -
Trre13g04796 387 SMART sant 66 114 IPR001005 -
Trre13g04796 387 SMART sant 13 63 IPR001005 -
Trre13g04796 387 CDD SANT 16 61 IPR001005 -
Trre13g04796 387 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre13g04796 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre13g04796 387 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Trre13g04796 387 MobiDBLite consensus disorder prediction 210 234 - -
Trre13g04796 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre13g04796 387 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre13g04796 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre13g04796 387 MobiDBLite consensus disorder prediction 288 309 - -
Trre13g04796 387 Gene3D - 11 67 - -
Trre13g04796 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre13g04796 387 CDD SANT 71 112 IPR001005 -
Trre13g04796 387 Gene3D - 70 140 - -
Trre13g04796 387 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04796 Trre-Chr13 54603824 54608041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04796 1 178 MYB Transcription Factor Family AT5G49330 64.865 3.34e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g04796 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04796 K09422 - zju:107426233 333.954