Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04785 ATGGCAACAAGAAATCGAACTCTAGAGTTCAGAAAGCACAGAGACACTGTCAAAAGTTTACGCACTCCTCTTTCTTCATCAGCTTCTGCTTCTTCCGGTGGTCCTGTCATTGAAATGGTTAACACTTCACTTCTTCGTTCCAATAATCGATCTTCTTATACTCCTCTTAGTACCCAAGACCCAGGTCCATCTTCCTCAAGTGATGCATTTACTGTGGGTTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATATCTACAAATATACAACGTGCAAAGGTTAAAATGTCTGAGTTAACCAAAGCTCATGCAAAGGCTTTAATGCCTTCCTTTGGTGATGGTAAAGATGATCAGCATCAGATTGAGACTCTCACCCGGGAAATTACGGCGCTCCTCAGAAAGTCTGAAGTGAGACTAAAAAAACTTTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAAGAAAAATGTGCAGCGTTCGCTTGCTACGGACCTTCAGAACTTGTCAATGGACCTCAGGCGGAAGCAGTCGGCATATTTGAAACGTTTGCAGCAGCAACAAGAGGGTTATGACGGGATTGACTTGGAGATGAACTTTAATGGGAGTAAATCTGGATTGCAGGACGATGGATTCGATGATGTGGGTTTTAGTGAAGCGCAGTTGACAAAGCTAAAGAAAAATGAGCAGATTTCAGCGGAAAGAGAAAGAGAAATTGATCAGGTCGCTAAATCAGTCCAGGACCTTGCTCAAATCATGAAGGATCTCTCCGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACAACCGTTGAGGAGGGCTTTAAGCAGTTGCAGAAGGCGGAAAGAACGCAGAAAAAAGGAGGGATGATTACATGCGCAACAGTGCTCGTTATCATGTGCTTTGTCATGCTAGTTCTGTTGATACTCAAGGAGATAATCTTCTAG 978 0.4325 MATRNRTLEFRKHRDTVKSLRTPLSSSASASSGGPVIEMVNTSLLRSNNRSSYTPLSTQDPGPSSSSDAFTVGLPPSWVDDSEEISTNIQRAKVKMSELTKAHAKALMPSFGDGKDDQHQIETLTREITALLRKSEVRLKKLSAGRGSSEESNVKKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQQEGYDGIDLEMNFNGSKSGLQDDGFDDVGFSEAQLTKLKKNEQISAEREREIDQVAKSVQDLAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLILKEIIF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04785 325 FunFam Syntaxin-43 75 283 - -
Trre13g04785 325 SMART tSNARE_6 224 291 IPR000727 -
Trre13g04785 325 SMART SynN_4 69 185 IPR006011 GO:0016020
Trre13g04785 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre13g04785 325 SUPERFAMILY t-snare proteins 74 284 IPR010989 GO:0016020|GO:0016192
Trre13g04785 325 Gene3D - 75 283 - -
Trre13g04785 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Trre13g04785 325 MobiDBLite consensus disorder prediction 1 19 - -
Trre13g04785 325 MobiDBLite consensus disorder prediction 20 35 - -
Trre13g04785 325 PANTHER SYNTAXIN 80 311 IPR045242 -
Trre13g04785 325 MobiDBLite consensus disorder prediction 48 70 - -
Trre13g04785 325 Pfam SNARE domain 265 317 IPR000727 -
Trre13g04785 325 CDD SNARE_syntaxin16 233 290 - -
Trre13g04785 325 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04785 Trre-Chr13 54536561 54542061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04785 1 325 SNARE and Associated Proteins AT4G02195 68.098 9.89e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04785 K08489 - gmx:100803629 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04785 13 54536561 54542061 Trre13g04785 13 54536561 54542061 ECH
Trre13g04785 13 54536561 54542061 Trre1g04211 1 47557964 47563372 ECH