Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04783 ATGCCTTCTTCCGATCCCCATTCCGCCGCCACTAATATCAATCCTAAGTGTCTCCTTTTCAATGCTGCCTCCGGTGCATCTGCCGGAGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTTATCAAAACTAGGTTTCAGGTTCATGGTGTGCCTCAGCTTGCTAATGGATCTGTTAAAGGCAGTGTAATATTCGCTAGTTTGCAACAAATATTTCACAAGGAAGGGTTACGTGGCATGTACCGCGGACTGGCTCCTACTGTGTTAGCTTTGCTTCCAAATTGGGCGGTTTATTTTACTATGTATGAGCAGTTCAAAAGCCTTCTTCATTCTGATGATGAAAGCCATCACCTTTCAGTTGGAGCTAATATGGTAGCTGCTGCTGGTGCTGGAGCTTCAACTACCTTGTTTACAAATCCGCTTTGGGTTGTCAAGACTCGACTTCAAACTCAGGGAATGAGACCTGGTGTTGTGCCATATAAGAGCACACTATCTGCATTGAGGAGAATTGCACATGAGGAGGGCATACGGGGGCTGTACAGTGGCCTTGTACCTGCTCTAGCTGGTATCAGTCATGTTGCCATTCAATTCCCAATGTATGAAACAATAAAATTTTATTTAGCAAATCAAGATGACGCGGCAGTAGATAAACTTGGGGCACGTGATGTGGCTATTGCTTCATCAGTATCCAAACTTTTTGCATCCACATTGACATATCCCCATGAGGTTGTACGTTCCAGATTGCAAGAACAAGGGCATCACTCAGAGAAACGATACTCTGGTATGATTGACTGTATTAAAAAGGTTTTTCACCAAGAAGGTGTACCTGGTTTTTACCGAGGATGTGCCACCAACCTTTTAAGGACAACACCAGCTGCCGTAATCACATTCACTAGCTTTGAAATGATACACCGATTTCTTGTTTCACATTTTCCTTCTGATCCACAGCCTCATATTTTGTGA 963 0.4361 MPSSDPHSAATNINPKCLLFNAASGASAGVIAATFVCPLDVIKTRFQVHGVPQLANGSVKGSVIFASLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTMYEQFKSLLHSDDESHHLSVGANMVAAAGAGASTTLFTNPLWVVKTRLQTQGMRPGVVPYKSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPMYETIKFYLANQDDAAVDKLGARDVAIASSVSKLFASTLTYPHEVVRSRLQEQGHHSEKRYSGMIDCIKKVFHQEGVPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSHFPSDPQPHIL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04783 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 306 IPR018108 -
Trre13g04783 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 118 206 IPR018108 -
Trre13g04783 320 SUPERFAMILY Mitochondrial carrier 19 302 IPR023395 -
Trre13g04783 320 Pfam Mitochondrial carrier protein 117 209 IPR018108 -
Trre13g04783 320 Pfam Mitochondrial carrier protein 21 111 IPR018108 -
Trre13g04783 320 Pfam Mitochondrial carrier protein 224 309 IPR018108 -
Trre13g04783 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 108 IPR018108 -
Trre13g04783 320 FunFam NAD+ transporter 116 311 - -
Trre13g04783 320 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 20 309 IPR044712 GO:0006862|GO:0055085
Trre13g04783 320 PRINTS Mitochondrial carrier protein signature 34 48 IPR002067 GO:0055085
Trre13g04783 320 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Trre13g04783 320 PRINTS Mitochondrial carrier protein signature 133 151 IPR002067 GO:0055085
Trre13g04783 320 PRINTS Mitochondrial carrier protein signature 21 34 IPR002067 GO:0055085
Trre13g04783 320 PRINTS Mitochondrial carrier protein signature 227 249 IPR002067 GO:0055085
Trre13g04783 320 Gene3D Mitochondrial carrier domain 114 313 IPR023395 -
Trre13g04783 320 Gene3D Mitochondrial carrier domain 2 113 IPR023395 -
Trre13g04783 320 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 3 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04783 Trre-Chr13 54520968 54526579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04783 14 320 Chloroplast and Mitochondria Gene Families AT2G47490 76.547 2.18e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04783 K15115 - gmx:100500213 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04783 13 54520968 54526579 Trre13g04783 13 54520968 54526579 ECH