Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04782 ATGGCATCAGAGACATCCTTGTCATTTTCAGTTGCATCTGTTGTTGAAGATGTACTTCAACAACACGGTCATCGTCTCAAACATCTTGATTTTGATTCTAGGATAGCACAACAAGCTGCATCTAGAAGATATGAAGCGGCAGGGTGGTTAAGAAAAATGGTTGGAGTTGTTGCTGCTAAAGATTTACTGGCAGAGCCATCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATCTTATGTAATGTTATTAATAAGCTTCAATCTGGAGCTGTTCCTAAGGTTGTGGAGAGTCCTGTTGATTCTGCAATGATCCCGGATGGAGCACCATTATCAGCATATCAATATTTTGAAAATGTCAGGAATTTTCTGGTGGCTGTAGAAGAAATTGGAATTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCCAGGATTGTGAACTGTATCTTGGCCCTTAAATCCTATGGTGAATGGAAACAGAATGGGGCAAATGGTGTGTGGAAATTCGGTGGGAATCTCAAACCTACTATCTCTTCAAAATCTTTTGTGAGAAAAAACTCGGAACCATTTACTAATTCCTTGTCAAGGACCTCATCGATCAATGAAAAAACTCTGTCTACTCTTAGTTCTGATTTTGAGTCCGATAAAATGTCTGGTTCCCATTCTTTGAGTATGCTTATTCGTTCTATTCTTTCCGATAAGAATCCAGAAGAAATTCCAATGTTGGTCGAATCTGTTTTGATTAAGGTTGTAGAGGAGTTTGAACATCGGATTGCAAGCCAAGGTGAACAGACAAAAATAACTTTAAGAGATCATGTTTCTGAAAGGAATGGATCCGCGTCAAAGTTTGTTGTGGCAGATAAAAAGGTGGAGAACAAGATTCATATGGTAGCTAAGAAAGAGGTTCACATCGATAAGAGTTGTGTGGCTGCTGAGGAATTGCAACGCCAACACCTGAAGCAGCAAATGCTCTTTGACCAACAGCAAAGAGACATTCAAGAGCTAAAGCTCACTCTTCACACCACAAAAGCTGGGATGCAGTTCATGCAAATGAAATTTCATGACGAGTTTTCCAATCTTGGAATGCACATTCATGGCTTAGCTCATGCGGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATGAAGTCCAAGATCTAAAGGGAAGTATTAGGGTATACTGTCGAGTAAGACCCTTCTTTCCTGGACAACCAAACCAATTGAGCGCAGTAGAAAATATAGAAGATGGAACTATCACAGTTGGTATTCCTTCAAGAAATGGGAAGGGACATAGATCCTTCAACTTTAACAAAGTCTTCGGGCCATCTGCTACCCAAGCGGAGGTCTTCCTTGATATGCAACCACTTATTAGATCTGTACTTGATGGTTATAATGTTTGCATATTTGCATATGGTCAAACAGGGTCAGGAAAAACTTACACAATGACTGGACCAAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGCGATTTGTTTTTTATAGCAGATCAAAGAAAGGACACTTTCCACTATGATGTTTATGTTCAAATGATTGAGATTTATAATGAGCAAGTTAGGGATCTATTGGTCACTGATGGAACAAACAAAAGATATCCTTTCATCAAAATTCGTTGTAGCTCTCACAAAGGGCTCAGTGTGCCAGATGCAAGCCTTGTCCCTGTGTCATCAACTATTGATGTTATCGAACTAATGAACCTTGGGCACAGGAACCGTGCTGTTGGAGCAACAGCCCTTAACGACCGCAGTAGCCGATCTCATAGTTGTTTGACTGTTCATGTTCAAGGAAGAGATTTGACATCTGGAGCTACCATCCGTGGATGCATGCATTTGGTTGACTTAGCAGGAAGTGAGAGGGTAGATAAGTCTGAGGCCACTGGAGATAGATTAAAAGAGGCACAACATATTAACAAATCTCTATCAGCTTTGGGCGATGTCATTGCTTCGCTAGCTCAGAAAAACTCGCATGTACCTTATAGAAATAGTAAACTCACACAATTGCTCCAAGATTCACTTGGAGGACAGGCTAAGACACTGATGTTTGTTCACATAAGTCCTGAAAGTGATGCGATTGGAGAAACAATTAGTACTTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCTGCTCGAGTAAACAAAGATGGTGCAAATGTTAAAGAGCTCAAAGAACAGATTGCCAGCCTTAAGGCAGCACTGGCAAGAAAAGAAGGCGAATCAGAACATTCTTTTTCCGGAAGCTCAGAAAAATATAGGACAAAGACTAGTGAGCTATCCCCTTATCACATAAACCAGCCGGTTGCAAACACTGGTGATCAGCTTAGATGCCGGCGACCAATGGTTGAAGTTGGCAATATAGAGCTTCAGAGTAAAATCGTAACGAGGCAGAAAACTCAAAGCATTGACTTTGATGAGATATCAGCAAATTCACCACCCTGGCCCCCAGTAAATAGTCTTGGGAAAAACAATGGGGAGGACGACAAAGAAACAGGTTCTGGAGAGTGGGTTGATAAGGTAATGGTAAACAAGCTAGATGCAAACAAAACTGAGAACCTCTTGGAGTGTTGGCAAGAAAGCAATGGAAATTTATCTGAATCCTTTTATCAGACATATCTCCAAGATTCTTCCAAAATGTACTCAGAACAGTCCTATAATAATATGTTCATGGGAGGTAACCAGTTTAGTAGCATTATTATGGGTTCAGATGACAACATGGATGAGATTGATGCTGCAACCAGTGATTCCTCAGAACCTGATTTGCTTTGGCAATTTAATCATTATAAATTTACCAGTTTGACTAATGGAATTGGATCAAAGACTATTATGAGATCTGTCTCAAAGACAACAAAAAGTCCAGAATTGAGCAAGAATTATGTTCATTCTTCTCTTGGTCCTTCACCTTCGTCGAAACAATCAAAAGTTGTCTCACATAGGACAGGAAGAAGTCCAGTTCCTATTGATATGAAACGCAATACTGGGAATAGAAAGTAA 3057 0.401 MASETSLSFSVASVVEDVLQQHGHRLKHLDFDSRIAQQAASRRYEAAGWLRKMVGVVAAKDLLAEPSEEEFRLGLRSGIILCNVINKLQSGAVPKVVESPVDSAMIPDGAPLSAYQYFENVRNFLVAVEEIGIPTFEASDLEQGGKSSRIVNCILALKSYGEWKQNGANGVWKFGGNLKPTISSKSFVRKNSEPFTNSLSRTSSINEKTLSTLSSDFESDKMSGSHSLSMLIRSILSDKNPEEIPMLVESVLIKVVEEFEHRIASQGEQTKITLRDHVSERNGSASKFVVADKKVENKIHMVAKKEVHIDKSCVAAEELQRQHLKQQMLFDQQQRDIQELKLTLHTTKAGMQFMQMKFHDEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFFPGQPNQLSAVENIEDGTITVGIPSRNGKGHRSFNFNKVFGPSATQAEVFLDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFFIADQRKDTFHYDVYVQMIEIYNEQVRDLLVTDGTNKRYPFIKIRCSSHKGLSVPDASLVPVSSTIDVIELMNLGHRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGATIRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDAIGETISTLKFAERVATVELGAARVNKDGANVKELKEQIASLKAALARKEGESEHSFSGSSEKYRTKTSELSPYHINQPVANTGDQLRCRRPMVEVGNIELQSKIVTRQKTQSIDFDEISANSPPWPPVNSLGKNNGEDDKETGSGEWVDKVMVNKLDANKTENLLECWQESNGNLSESFYQTYLQDSSKMYSEQSYNNMFMGGNQFSSIIMGSDDNMDEIDAATSDSSEPDLLWQFNHYKFTSLTNGIGSKTIMRSVSKTTKSPELSKNYVHSSLGPSPSSKQSKVVSHRTGRSPVPIDMKRNTGNRK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04782 1018 SMART kinesin_4 397 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 Pfam Kinesin motor domain 405 726 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 PRINTS Kinesin heavy chain signature 597 614 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 PRINTS Kinesin heavy chain signature 677 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 PRINTS Kinesin heavy chain signature 628 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 PRINTS Kinesin heavy chain signature 472 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Trre13g04782 1018 PANTHER KINESIN-LIKE PROTEIN KLP-3 47 903 IPR027640 GO:0003777|GO:0007018
Trre13g04782 1018 SUPERFAMILY Calponin-homology domain, CH-domain 42 173 IPR036872 -
Trre13g04782 1018 MobiDBLite consensus disorder prediction 969 1000 - -
Trre13g04782 1018 CDD KISc_C_terminal 397 729 - -
Trre13g04782 1018 Gene3D - 32 162 IPR036872 -
Trre13g04782 1018 FunFam Kinesin-like protein KIN-14I isoform A 27 179 - -
Trre13g04782 1018 MobiDBLite consensus disorder prediction 827 854 - -
Trre13g04782 1018 Coils Coil 734 761 - -
Trre13g04782 1018 CDD CH_AtKIN14-like 42 159 - -
Trre13g04782 1018 ProSiteProfiles Kinesin motor domain profile. 399 727 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g04782 1018 MobiDBLite consensus disorder prediction 759 778 - -
Trre13g04782 1018 MobiDBLite consensus disorder prediction 969 1018 - -
Trre13g04782 1018 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Trre13g04782 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 759 IPR027417 -
Trre13g04782 1018 SMART ch_5 42 160 IPR001715 GO:0005515
Trre13g04782 1018 FunFam Kinesin-like protein KIN-14I isoform A 394 769 - -
Trre13g04782 1018 Gene3D Kinesin motor domain 394 768 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04782 Trre-Chr13 54506906 54512738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04782 387 727 Calmodulin-binding Proteins AT5G65930 41.642 4.15e-74 265