Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04777 ATGAGAACACAACTACAACATTTGCGTATTGACAAAAACGAGCAGGAACTTCTGGGCTGCGGAACTAAAATTTCGGGCCAATCAGGCTCGTCGAGCAGGAGTGAGCAGACGACTGGGATAGCTACCAGTGATAATGCTGCGCTCGAATTAAACCATCTCGACATACATGACAATGATGCTGGATCAAAGGGAGCAGTTGTTAGCAAGAAGAAAAAGAAGGGCCAACAACGGGCGTCTGGAGGAGATACAAGTGGAAGAGGGCTCCCCCAAGTTACCATGAAAGTGTTTGAAAAGATAGAAAGGAAGGGAAAAACAACTTTCAACGAGGTGGCAGATGAACTTGTGGCTGAACTTTCTGATCCAATGAATAGTGTTTTGTCCCCCAATAAGAAACAATATGATGAGAAAAACATCCGCCGAAGGACCTACGATGTTCTGAATGTTCTCACGGCAACGGATATTATTTCCAAGGATAAAAAGGAAATAAAATGGAAGGGTCTTCCTACTCCTAGTCCTATTGAGGAGCTAAGGACGGAGCGTGTTGGAATCAGGAATAGAATTGAAAGCAAAGCATCCTATCTAAAGGAGCTTGAGGAACAATTTGTAGGTCTTAAGAATCTTGTTCAACGAAATGAGCAACTATATAGATCAGAAAATCCTCCCAACGGAGGTGTATCTTTACCTTTTGTTCTGGTACAGACGCATCCTCATGCAACTGTTGAACTTGAAGTAAAAATATCAGAAGACAATCAAGATACGCAGCTTGTTCATTTTGATTTCAATAGTACTCATTTTCAACTGTATGATGACAATTATGTGCTCAAAGCAATGGAATTTTGTGATAGTCCTCGGAATGATATTGTTACGCTCACGGAAGAAGGGGAAGGTTCTAGCTTGTCAGGCTTGCATCAATTACAGGTTCCTCCTTCAGTTCCTGGAATACTAAAGAACAATGCGATGGATTCAAACAAAAGGCGCAAATGTGATTCGAGTTTGACATTATCTGGTATTACTAATGTTACTTCTTCATCATTGCATTCACAAGTGTCCAATATAAGTGTGTTTCGAAAACCCTTGCCTATTGGGCCTGGTAAGTATGTTCTCGAGCACCCCAGAAGCCCACATAGAAGAGACGGAAATTCTCCAACGAATTTCGACATATCTTTCAATAAGGAAATATATGTGGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCTGATAATAATTCTGTGTCCAGCAAAAATGTGTTTCGAAAACCTTTGCATATTGGACCCGGTAAATATGTTCTCAAGCGCCCCAGAAGCCCACATAGAAAAGACGAAAGTTCTCTAATGAATTTCGACATATCTAACAATAAGGAAATATATGTAGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCAGATAATAATTTGGCTTATGTGGAACTAGTTGGTATTTGGACCAAAGCATCTTGCTTGTCTTGTATCGTTTACTAG 1485 0.4061 MRTQLQHLRIDKNEQELLGCGTKISGQSGSSSRSEQTTGIATSDNAALELNHLDIHDNDAGSKGAVVSKKKKKGQQRASGGDTSGRGLPQVTMKVFEKIERKGKTTFNEVADELVAELSDPMNSVLSPNKKQYDEKNIRRRTYDVLNVLTATDIISKDKKEIKWKGLPTPSPIEELRTERVGIRNRIESKASYLKELEEQFVGLKNLVQRNEQLYRSENPPNGGVSLPFVLVQTHPHATVELEVKISEDNQDTQLVHFDFNSTHFQLYDDNYVLKAMEFCDSPRNDIVTLTEEGEGSSLSGLHQLQVPPSVPGILKNNAMDSNKRRKCDSSLTLSGITNVTSSSLHSQVSNISVFRKPLPIGPGKYVLEHPRSPHRRDGNSPTNFDISFNKEIYVECNENGEEYDVPDNNSVSSKNVFRKPLHIGPGKYVLKRPRSPHRKDESSLMNFDISNNKEIYVECNENGEEYDVPDNNLAYVELVGIWTKASCLSCIVY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04777 494 Coils Coil 194 214 - -
Trre13g04777 494 CDD DP_DD 173 277 IPR014889 -
Trre13g04777 494 SMART DP_2 171 321 IPR014889 -
Trre13g04777 494 SMART E2F_TDP_2 83 166 IPR003316 GO:0005667|GO:0006355
Trre13g04777 494 Pfam E2F/DP family winged-helix DNA-binding domain 86 166 IPR003316 GO:0005667|GO:0006355
Trre13g04777 494 Gene3D Transcription factor DP 172 297 IPR038168 -
Trre13g04777 494 FunFam Transcription factor Dp-1, a 78 171 - -
Trre13g04777 494 Gene3D - 78 171 IPR036388 -
Trre13g04777 494 PANTHER TRANSCRIPTION FACTOR DP 29 298 IPR015648 GO:0005667|GO:0051726
Trre13g04777 494 SUPERFAMILY "Winged helix" DNA-binding domain 86 167 IPR036390 -
Trre13g04777 494 FunFam Transcription factor-like protein DPB 170 298 - -
Trre13g04777 494 SUPERFAMILY E2F-DP heterodimerization region 173 292 IPR037241 -
Trre13g04777 494 MobiDBLite consensus disorder prediction 58 88 - -
Trre13g04777 494 Pfam Transcription factor DP 173 291 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04777 Trre-Chr13 54465072 54470601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04777 71 278 E2F-DP Transcription Factor Family AT5G02470 45.024 2.53e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre13g04777 DP 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04777 K04683 - zju:107414839 365.925