Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04775 ATGGTCTCTCTCAAACTCCAAAAGCGTCTTGCTTCCAGCGTTCTCAAGTGCGGTAGAGGCAAAGTATGGCTAGATCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATTAGGAAGCTGGTTAAGGATGGTTTTATCATCAGAAAACCTACCAAGATTCATTCCCGATCACGTGCTCGTCGTATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACAAGGGAGGCAAGGCTTCCAACAAAGATCCTTTGGATGAGGAGAATGCGTGTGCTTAGACGTTTGCTCCGCAAGTACCGTGAGTCTAAGAAGATCGACAAGCACATGTATCATGACATGTATATGAAGGTTAAGGGTAACGTGTTTAAGAACAAGAGAGTTTTGATGGAGAGCATTCATAAATCGAAAGCTGAGAAGGCTAGAGAAAAGACCTTGTCTGACCAATTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGGAAGTTTGCTCGGAGGGAGGAACGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGATGTTTCAAGTGCTCCACCTGCTACAGCAGCACAGCCTACCCAACCATCAAAGAAATCTAAGAAGGGAGCTGCAGTCTGA 654 0.4648 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGGEKPADVSSAPPATAAQPTQPSKKSKKGAAV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04775 217 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre13g04775 217 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g04775 217 MobiDBLite consensus disorder prediction 149 217 - -
Trre13g04775 217 MobiDBLite consensus disorder prediction 149 185 - -
Trre13g04775 217 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g04775 217 MobiDBLite consensus disorder prediction 57 85 - -
Trre13g04775 217 FunFam Ribosomal protein L19 1 56 - -
Trre13g04775 217 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre13g04775 217 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre13g04775 217 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre13g04775 217 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre13g04775 217 FunFam Ribosomal protein L19 57 190 - -
Trre13g04775 217 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre13g04775 217 Gene3D - 57 186 - -
Trre13g04775 217 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04775 Trre-Chr13 54451920 54453474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04775 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.568 1.36e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04775 K02885 - sly:101261236 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04775 13 54451920 54453474 Trre13g04775 13 54451920 54453474 ECH