Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04766 ATGAGAGAAAAAACAGAACCATTGTTGGTTCTCATACCAATCTTAGTTCTACTATTTTCAGTGACCAATTCCTCAGAATTACCAACACAAAACCATCTCCAAGTTGCACATTCAACATGTGAAGGAACACTCTACCCAGACCTTTGTGTCTCAACCTTATCCACATTCCCAGATCTTACCTCAAAAACAGTCCCTCAAGTGATTTGCTCTGTCCTTAACTTCACCATAAAGGAAGTTAAGTCATCATCTTCCAACTGCACCGGCCTACGATATCATAGCGGAAGTGCAAAAAGTATACTTGACAAAAGAGCCCTTGATGATTGTATCAATTTATTCGACACCACTATCGAAGAAATCAAAACAACAATTTCTGATCTCTCTCAAGCTCAAACCACTATAGCTTCTGTCGAAAAACGTAACTGTCAAACTCTGCTTAGCGGCGCAATGACGAATGTATACACATGTTTGGATGGTTTTGCTTATAGTAAATCAAAATTAAGAAAGAAAATTGAGAATAGTTTGAATGATATTTCTAGTCATGTTAGTAATTCACTTGCCATGTTGAAGAAAGTTCCTGGAGTTAAGTCTAAAACTTCAAACTCTGAGGCTTTTCCTGAATATGGCAAGGTGAAAGACGGGTTTCCGACTTGGGTTTCTCCGAAAGATAGGAAGCTATTACAAACCGCGACGAATCAGACTAAGTTCAATCTTGTTGTTGCTAAAGATGGCTCAGGCCATTTTACTACTATAGGAGCAGCAATTGCTGCAGCTCCAAACTCTAGCCCAACTAGATTTTTGATACATATAAAAGCGGGGACGTACTTAGAGAATGTGGATGTGCCAAAGAAGAAAACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACAGTTGTGAAGGCTAGTAGAAATGTTGTAGATGGATGGACCACTTTCCAATCATCTACATTTGCTGTTGTGGGAGACAATTTCATAGCCAAGGGAATAACCTTTGAGAATTCAGCTGGAGCAAGCAAACATCAAGCCGTGGCCTTGAGAAGCGGTGCCGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCTTACCAAGATACTCTATATGTCCATTCTCTCCGTCAATTTTACCGCGAATGCGATGTTTATGGCACCGTAGACTTCATCTTTGGCAATGCAGCTGTGGTTTTCCAAAATTGTAACCTATATGCGCGCAAACCCGATCCAAAGCAAAAGAATTTGTTCACTGCACAAGGAAGAGAAGATCCTAACCAAAACACCGGAATTTCGATCATAAACTCTAAAGTTACGGCTGCTGCGGATTTGATTCCGGTGAAATCAACGTTCAAGACTTACCTCGGTCGTCCTTGGAAAAAATATTCAAGAACAGTTTATCTTAATTCGTTTTTGGACGATTTGATAGATCCGGCTGGATGGTTAGAATGGGACGGAACATTTGCGTTGGATACATTGTACTACGGCGAGTATAATAATCGAGGTCCGGGTTCGAATACCGCTGGTAGAGTTAAGTGGGCAGGTTATAAAGTGATTACAAGCACTACTGAGGCAAGTCAGTTCACTGTTAGGCAGTTTATTCAAGGCAATGAATGGTTGAGTCCTACTGGAATTCCATTTTTCCCTGATTTGAGTTGA 1647 0.4056 MREKTEPLLVLIPILVLLFSVTNSSELPTQNHLQVAHSTCEGTLYPDLCVSTLSTFPDLTSKTVPQVICSVLNFTIKEVKSSSSNCTGLRYHSGSAKSILDKRALDDCINLFDTTIEEIKTTISDLSQAQTTIASVEKRNCQTLLSGAMTNVYTCLDGFAYSKSKLRKKIENSLNDISSHVSNSLAMLKKVPGVKSKTSNSEAFPEYGKVKDGFPTWVSPKDRKLLQTATNQTKFNLVVAKDGSGHFTTIGAAIAAAPNSSPTRFLIHIKAGTYLENVDVPKKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSSTFAVVGDNFIAKGITFENSAGASKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPKQKNLFTAQGREDPNQNTGISIINSKVTAAADLIPVKSTFKTYLGRPWKKYSRTVYLNSFLDDLIDPAGWLEWDGTFALDTLYYGEYNNRGPGSNTAGRVKWAGYKVITSTTEASQFTVRQFIQGNEWLSPTGIPFFPDLS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04766 548 Gene3D - 230 547 IPR012334 -
Trre13g04766 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 191 IPR035513 -
Trre13g04766 548 FunFam Pectinesterase 230 547 - -
Trre13g04766 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 193 IPR035513 -
Trre13g04766 548 SMART PMEI_2 31 187 IPR006501 GO:0004857
Trre13g04766 548 SUPERFAMILY Pectin lyase-like 232 545 IPR011050 -
Trre13g04766 548 Pfam Plant invertase/pectin methylesterase inhibitor 37 187 IPR006501 GO:0004857
Trre13g04766 548 Pfam Pectinesterase 236 533 IPR000070 GO:0030599|GO:0042545
Trre13g04766 548 CDD PMEI-like_3 38 193 - -
Trre13g04766 548 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Trre13g04766 548 PANTHER PECTINESTERASE 17 537 - -
Trre13g04766 548 NCBIfam pectinesterase inhibitor domain 8 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04766 Trre-Chr13 54408161 54412637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04766 60 547 Carbohydrate Esterase AT4G02320 55.179 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04766 K01051 - gmx:100813592 806.979