Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04763 ATGGCCTTCAAAAAAATTTCCTTTCTTACACTCTTCTTTTCTCTCTCACTTTCCATCTTATCATCTCTAGCTGATAATAATTCTAAGATCCCACCACAAAAAATATGCGACTCCACCGTAGACCCTACCTTTTGCAAAACTCTACTTGCTAACCAAAACGGCACCGTAATTGACTATGGTCGATTTTCTATCCGAAAATCTTTATCTCAATCACAAAATTTATTAAACTTAGTAAATTCACATCTTCAAAATAAATCATCTTTGTCACAACCCACAATTTCAGCTCTTCAAGATTGTCAATTCCTAGCTCAACAAAATTTTGAATATTTATCAAACACTCATCAAACTGCTAATAGTACTAGCAATGTTCTTTCCATTTCTCAAAGTGAAGAATTTCAAACAACTCTTAGTGCTGTTTTAACAAACCAACAAACATGTTTAGATGGTTTAAGCATCACAAATTCTGATCAAACGGCGATTAATGATTTAACATCGACACTTTCAAACGATGCAAAGATTCATAGTGTGTCACTTGCTCTATTTTTAAAAGGTTGGGTTCGTGACAACAAAAAACAAACATCATGGCCACAAAATGGAAGACATTTGAATTTTCATAACGGTCGTTTACCATTGAAAATGTCGAATGGAGTACGTGCTATTTATGATTCGGCTAGAAATCGACATGGGAGAAAATTACTTCAAACAGTTGATGAAAGTGTTACGGTAAGTGAAATCGTGGTTGTTAATCAAGATGGAAGTGGAAATTTTACAACTATAAATGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGTAGTGGCTATTTTCTTATTTTTGTTACGGAGGGTGTGTATCAAGAGTATGTATCTATACCGAAAAATAAGAAATATTTGATGATGGTCGGAGATGGGATTAATCGAACAATCATCACCGGTGATCACAATGTTGTTGATAATTTTACAACGTTCAATTCAGCAACATTTGCTGTGGTGTCACAAGGTTTCTTAGCAGTCAACATAACATTCCGCAACACGGCCGGGCCAATCAAACACCAAGCCGTCGCAGTAAGAAACGGAGCGGATCTATCCACATTCTACAGCTGCAGTTTCGAAGGTTATCAAGACACATTATACACACATTCCATGAGACAATTTTATCGCGAATGCGATATCTATGGCACAGTTGACTTCATATTTGGAAACGCTGCAGTTGTTTTTCAAAATTGCAACTTATATCCCCGTCTTCCTAGTACTGGACAATTCAACGCTATAACCGCTCAAGGCCGAACTGATCCAAATCAAAACACAGGAACTTCCATACATAACACAACTATAAAAGCCGCGGATGATTTAGCTCCGATGATCGGTACAGTTAAAACATACCTTGGTAGACCATGGAAAGAGTACTCAAGGACAGTTTATTTGCAATGTTTTATAGACAGTTTGATAAATCCTTCTGGTTGGTCTATATGGAGTGGTGATTTTGCATTAAGTACATTGTATTATGCAGAGTATAATAATACAGGACCTGGTTCAAATACTTCCAATAGAGTTACATGGCAAGGATACCATGTGATTAATGCTACTGATGCTGCTAATTTTACTGTGTCTAACTTTTTGGATGGGGATAGTTGGTTGCCTCAAACTGGTGTTCCATACTCTAGTGGATTGATATAA 1680 0.3661 MAFKKISFLTLFFSLSLSILSSLADNNSKIPPQKICDSTVDPTFCKTLLANQNGTVIDYGRFSIRKSLSQSQNLLNLVNSHLQNKSSLSQPTISALQDCQFLAQQNFEYLSNTHQTANSTSNVLSISQSEEFQTTLSAVLTNQQTCLDGLSITNSDQTAINDLTSTLSNDAKIHSVSLALFLKGWVRDNKKQTSWPQNGRHLNFHNGRLPLKMSNGVRAIYDSARNRHGRKLLQTVDESVTVSEIVVVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVVDNFTTFNSATFAVVSQGFLAVNITFRNTAGPIKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPSTGQFNAITAQGRTDPNQNTGTSIHNTTIKAADDLAPMIGTVKTYLGRPWKEYSRTVYLQCFIDSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWQGYHVINATDAANFTVSNFLDGDSWLPQTGVPYSSGLI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04763 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 181 IPR035513 -
Trre13g04763 559 CDD PMEI-like_3 35 185 - -
Trre13g04763 559 FunFam Pectinesterase 239 558 - -
Trre13g04763 559 SMART PMEI_2 27 180 IPR006501 GO:0004857
Trre13g04763 559 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Trre13g04763 559 SUPERFAMILY Pectin lyase-like 241 557 IPR011050 -
Trre13g04763 559 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Trre13g04763 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 183 IPR035513 -
Trre13g04763 559 PANTHER PECTINESTERASE 20 548 - -
Trre13g04763 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Trre13g04763 559 Gene3D - 244 559 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04763 Trre-Chr13 54388809 54391094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04763 5 559 Carbohydrate Esterase AT4G02330 59.965 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04763 K01051 - gmx:100813051 855.899