Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04762 ATGGTTTCTTCCAAGTTATGTAATCCCCTCTCAATATTTCTTATTCTTTTATTTGCTTCTATAGCATTTTCCGACACCGTGACTAGTCCAAATCCAATAACACCTACTTCTCCGGGTACTGCATGCAAATCTACTCCCGATCCAACCTATTGCAAATCCATTCTCCCTCCTCAAAATGGCAATGTTTACGACTATGCTCGATTTTCGGTCAAAAAATCTCTATCACAATCCCGAAAATTCTCGAACCTAATCAACCAATATCTCCAACGTCGCTCAAAACTTTCCACCACCGCTATACGAGTACTACAAGATTGTCAATCGCTCAGCGACCTCAACTTTGATTTCCTTTCGAGTTCTTTTCTAACCGTTAACAAAACAACTAAGTTTCTTCCAAGTTTACAAGCCGACAACATCCAAACATTACTTAGCGCGATTCTCACAAACCAACAAACATGTTTAGATGGTCTTAAAGACACTTCCTCTGCTTGGAGTTTTAGAAATGGACTCACAATTCCACTTTCTAATGACACTAAACTCTATAGTGTCTCTCTTGCTTTCTTCACTAAAGGTTGGGTTCCTAAAACCAAACCAAAAACCTCTTTTCATAATAATTTGCATCCCTCGTTTAAAAACGGACGTTTGCCACTTAAGATGTCGAGCAAGACACGCGCGATTTACGAGTCAGTTAGTCGTAGAAAGCTTCTTCAAAGTAATCAAGTTGGTGAGGATGTTGTGGTGAAAGATATTGTGACGGTTAGTCAAGATGGAAGTGGAAACTTTACGACGATTAATGATGCTATTGCTGCAGCTCCAAATAAATCTGTTTCTACTGATGGTTATTTCTTGATCTATGTTACTGCTGGTGTTTATGAAGAGTATGTTAATATTGATAAGAAAAAGACTTATTTGATGATGATTGGAGATGGTATCAACAAGACTATCATCACCGGAAATCATAGTGTTGTCGATGGATGGACCACATTCGGCTCCCCAACTTTCGCTGTGGTTGGACAAGGATTCGTTGGTGTGAATATCACCATCCGTAACACCGCGGGTGCTGTGAAGCATCAAGCAGTGGCACTTCGTAACGGGGCAGATTTATCAACCTTTTACAGTTGCAGTTTCGAAGGGTACCAAGACACATTATACACACATTCGCTAAGACAATTCTATAGAGAATGTGACATCTACGGAACAGTTGATTTCATATTCGGAAATGCTAAGGTTGTTTTTCAAAATTGTAACCTTTATCCTCGTCTTCCAATGAGTGGACAATTCAATGCAATAACAGCACAAGGTAGAACAGATCCAAATCAAGACACAGGTACTTCAATTCACAATTGTACAATTAAAGGTGCAGATGATTTAGTTTCTAGTAATGGTAATGTTGCAACATATTTGGGAAGACCATGGAAAGAGTATTCAAGAACAGTTTATATGCAAACATTTATGGATAATGTGATTAATGTTGCTGGTTGGCGTGCTTGGGATGGAGAATTTGCATTGAATACATTATATTATGCTGAGTTTAATAATACTGGACCAGGGTCTAATACTGATGGAAGAGTGACATGGCAAGGTTATCATATGATTAATGTCACTGATGCTGCTAATTTTACTGTGGCTAATTTCTTGCTTGGTGATGATTGGTTGCCTCAGACAGGGGTGTCTTATACTAATAACTTGATTAATATTTAA 1698 0.3846 MVSSKLCNPLSIFLILLFASIAFSDTVTSPNPITPTSPGTACKSTPDPTYCKSILPPQNGNVYDYARFSVKKSLSQSRKFSNLINQYLQRRSKLSTTAIRVLQDCQSLSDLNFDFLSSSFLTVNKTTKFLPSLQADNIQTLLSAILTNQQTCLDGLKDTSSAWSFRNGLTIPLSNDTKLYSVSLAFFTKGWVPKTKPKTSFHNNLHPSFKNGRLPLKMSSKTRAIYESVSRRKLLQSNQVGEDVVVKDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVNIDKKKTYLMMIGDGINKTIITGNHSVVDGWTTFGSPTFAVVGQGFVGVNITIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIKGADDLVSSNGNVATYLGRPWKEYSRTVYMQTFMDNVINVAGWRAWDGEFALNTLYYAEFNNTGPGSNTDGRVTWQGYHMINVTDAANFTVANFLLGDDWLPQTGVSYTNNLINI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04762 565 Gene3D - 244 562 IPR012334 -
Trre13g04762 565 SMART PMEI_2 33 186 IPR006501 GO:0004857
Trre13g04762 565 CDD PMEI-like_3 40 191 - -
Trre13g04762 565 NCBIfam pectinesterase inhibitor domain 10 175 IPR006501 GO:0004857
Trre13g04762 565 FunFam Pectinesterase 39 189 - -
Trre13g04762 565 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Trre13g04762 565 PANTHER PECTINESTERASE 16 552 - -
Trre13g04762 565 FunFam Pectinesterase 243 562 - -
Trre13g04762 565 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Trre13g04762 565 SUPERFAMILY Pectin lyase-like 246 559 IPR011050 -
Trre13g04762 565 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Trre13g04762 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Trre13g04762 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04762 Trre-Chr13 54364186 54366041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04762 10 564 Carbohydrate Esterase AT4G02330 62.522 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04762 K01051 - gmx:100800971 932.554