Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04745 ATGACACGAAGGCCTTTCGAGAAAATCAAAGACATCGATGATACCAAATCTCTATGGAAGATTGCTGTTAGAGTTAAGGACTTGTGGGTAGTTCGCCATGGAAAAACCAACAATCAACACTTTGAAATGGTTGTTTGTGATGAATTGGGTGATGAAATACAAGTTACTGTACCATCTGACCTAAATGATAAATTCAAAACACAATTTACTCTGCACCAAACTTGCACTCTGCAAAACTTTTCTGTTGAACACAATAAGTTCTCTATTAAGGCAACTCCTCATTCCTTTAAGTTGATTATTACTGCTGGCACGTTAATAGAAGATGTGAATCAACATAAAATTGCTGCCCCTGGGTACAAATTCAAAGATTTCTCTGACATCACCAATGGGAAAGTACCTTCAGATCTTTTAATAGATGTCATTGGAAACTTTCATGAACTTGGCTATACTCAGCTTGTGCCGGGTGGGAGAAAACTACAAGTTAACTTTAAACTTAAGGATCTTACCGGAAACATACTCAATGTTACACTATGGGAGGATTTTGCTTTGCAGTTTTCTAACTACAACAAACGAAGGACTGATTGGGGCCCAACTATCGTACTAATTCACAATGCTAAAATCAAAGAAGCTACAGATGCGTACGAACTTGGCATCTCTAATGTTTGGAATGGCACTCAATTATTCATCAATGCCGATCTCCCAGATATCATTCAGTTTAAATCAGGTCTAAATGTTGATGAAGGGTCTGCTTCTCAAAGCCAGCAGCTTAGCTCTCAGTCCCAAATGTTAACTCAATCCACTTCATTGACACAACACTCATCTGGTGATAGATTCTTGAACAATGCACTAATCCTCCCACTATCTGAAGTTTTGAAACTTACTGAGCCAACTATATGCCTGACCGTTGTTAACACACTCAAAATTAACCCTTCCAAATTTGGTTGGTACTACAAACTGTGTAGTCAATGTCCAAGGGCTGCCAAGGGGGCATCACTACCTTTGAGATGTGACAAAGATCATGAAACTCATGTCATCAATCTTAGGTACAAATTAGATCTTGATGTTGAGTATCAAGGTGTTAAAACAGTTTTTGTGTTCTGGGATCGTGAGTGCAACGAGCTTATTGGAAAAACTGCTGCAGACTTACACGCTGAAATGGTCGAGGCTGGTGTCACAAACCCTTTGGAGTACCCACTGGATGTAGACAATTGCACACGGCGAAAACTAGCTTGCAGAATTAAGTTGCAACCAAATTTCAATAACTATAGTGTTCAGGCAGTCAAAGTTGATGAAGAAGTCATAAAAAAAATTGAAGCCCAATTTCCCATCAATGAGGAAACTTTCAAATTGGCAAATGCACCAACTCCAGAAGTCCAGGATGACACTATGGATCTCCCTGTTCAATCTGAAGATGTCCAAGTTGGTCTTGAAACTCAGGACATTATCATGCCAACGGAACTTTCTGCTTCTTCAGAACATGATCCCAATGACCTACCAGCTACACCAGCTAAACAATCTTCTATGTCACCACTTGAAAAAAATGTTGCTGCGACACCGTCCAAATCTGATTCACAAACTCCCCCAAAACGCCACAAATCAACCATTGAAATTCCAGAAGAGGTTCTTAATGCTAACTGTCCCACCCAACAATCTTCTTCAAAACCTACCCTCACAAAGTTGAGAAGTATCATCAAAAAAGAAAAATGTCCATGA 1713 0.3952 MTRRPFEKIKDIDDTKSLWKIAVRVKDLWVVRHGKTNNQHFEMVVCDELGDEIQVTVPSDLNDKFKTQFTLHQTCTLQNFSVEHNKFSIKATPHSFKLIITAGTLIEDVNQHKIAAPGYKFKDFSDITNGKVPSDLLIDVIGNFHELGYTQLVPGGRKLQVNFKLKDLTGNILNVTLWEDFALQFSNYNKRRTDWGPTIVLIHNAKIKEATDAYELGISNVWNGTQLFINADLPDIIQFKSGLNVDEGSASQSQQLSSQSQMLTQSTSLTQHSSGDRFLNNALILPLSEVLKLTEPTICLTVVNTLKINPSKFGWYYKLCSQCPRAAKGASLPLRCDKDHETHVINLRYKLDLDVEYQGVKTVFVFWDRECNELIGKTAADLHAEMVEAGVTNPLEYPLDVDNCTRRKLACRIKLQPNFNNYSVQAVKVDEEVIKKIEAQFPINEETFKLANAPTPEVQDDTMDLPVQSEDVQVGLETQDIIMPTELSASSEHDPNDLPATPAKQSSMSPLEKNVAATPSKSDSQTPPKRHKSTIEIPEEVLNANCPTQQSSSKPTLTKLRSIIKKEKCP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04745 570 Pfam Domain of unknown function DUF223 42 137 IPR003871 -
Trre13g04745 570 SUPERFAMILY Nucleic acid-binding proteins 119 246 IPR012340 -
Trre13g04745 570 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Trre13g04745 570 CDD RPA1_DBD_A_like 20 106 - -
Trre13g04745 570 CDD RPA1_DBD_B_like 139 241 - -
Trre13g04745 570 Gene3D - 252 440 IPR012340 -
Trre13g04745 570 Gene3D - 5 111 IPR012340 -
Trre13g04745 570 MobiDBLite consensus disorder prediction 487 570 - -
Trre13g04745 570 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Trre13g04745 570 Gene3D - 113 251 IPR012340 -
Trre13g04745 570 MobiDBLite consensus disorder prediction 543 559 - -
Trre13g04745 570 MobiDBLite consensus disorder prediction 487 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04745 Trre-Chr13 54257467 54260097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04745 1 399 Core DNA Replication Machinery Family AT5G08020 23.095 9.52e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04745 - - tpra:123891620 681.404