Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04740 ATGAGTAGACGCTCAAGCAGAACCGTCTATGTTGGGAATCTTCCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTATTTATGAAGTATGGACACATAACTCACATTGACCTTAAGGTTCCACCAAGGCCCCCTGGCTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTGGCAATTCCTCTTCAAGAGATCGACATAGTAGTCATAGCAATGGTCGGGGTGGACGTGGAGTATCCAGACGTTCTGAATATCGTGTTCTTGTCAATGGATTGCCCTCCTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCTCAAGTTTTCCATGATGGAAGGGGTACTACTGGGATTGTGGATTACACAAACTACGATGATATGAAATATGCTATAAAAAAGCTTGACGACTCTGAGTTCCGAAATGCATTTTCCAAGTCTTATGTTCGAGTGAGGGAGTATGATTCGAGGCGGGACTCTAGAAGTCCGAGTCGTGGCCCTTCTCATTCTAGAGGAAGAAGCTGCAGCCGTAGTCGCAGCCGCAGCCGTAGCTGCAGTCCAGTCCACAGCACAAGCAAATCTCCTAAGGCTAAATCCTCACAACGTTCACCAGCTAAATCGCCAGCTAGATCAGTTTCTCGTTCTCGCTCAAGATCTAGATCCCGTTCTTTATCAGGATCACGTTCAAGGTCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCGGAGCAAGAGTTTGTCCAGATGA 900 0.4767 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGGNSSSRDRHSSHSNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGPSHSRGRSCSRSRSRSRSCSPVHSTSKSPKAKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKKRSASRSPSRSRSRSKSLSR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04740 299 CDD RRM1_SF2_plant_like 8 78 - -
Trre13g04740 299 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 113 - -
Trre13g04740 299 SUPERFAMILY RNA-binding domain, RBD 5 179 IPR035979 GO:0003676
Trre13g04740 299 MobiDBLite consensus disorder prediction 79 113 - -
Trre13g04740 299 SMART rrm1_1 115 186 IPR000504 GO:0003723
Trre13g04740 299 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre13g04740 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Trre13g04740 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Trre13g04740 299 FunFam serine/arginine-rich splicing factor SR34A-like 114 191 - -
Trre13g04740 299 MobiDBLite consensus disorder prediction 187 202 - -
Trre13g04740 299 Gene3D - 2 113 IPR012677 -
Trre13g04740 299 Gene3D - 114 191 IPR012677 -
Trre13g04740 299 MobiDBLite consensus disorder prediction 215 248 - -
Trre13g04740 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Trre13g04740 299 MobiDBLite consensus disorder prediction 273 288 - -
Trre13g04740 299 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 268 - -
Trre13g04740 299 MobiDBLite consensus disorder prediction 187 299 - -
Trre13g04740 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Trre13g04740 299 MobiDBLite consensus disorder prediction 96 110 - -
Trre13g04740 299 CDD RRM2_SF2_plant_like 114 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04740 Trre-Chr13 54232249 54236251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04740 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 2.69e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04740 K12890 - gmx:100789847 318.931