Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04736 ATGGCTATGTTTATTGCTGATGATAATCTCTTTTCAAAAATTGAAGAAATTAATTCTGATAAGTCAAATTGGAATTGTAAGGCTAAGATAATAAGACTTTGGGCTGTATCTGATTTCAATCGACCAAACATCCCTTTTTCTATTGAAATGGTTTTAATGGATTCTGAGGGAGCTAAAATTCATGCTACTGTTCGAAAAACTCTTATTTACAAATTTAAGGATGACTTGAGAGAGGGAAAGGTTTATGCTTTTGAAAATATGGGAGTTGCAACAAATGGTGGAGCTTATCGGACCACTAACCACCGTTATAAGTTAAATTTCCAGTTCACATCTATTGTTCAAATTCTTTCTAACCAAGACATTGTTATGTCTCCATTTAACTTTACTCCAATTGCTACTATTGTTGGAGGGTCTTATGACAATGATTATTTAGTTGATGTGATTGGGATGTTGACTGGTGTTGGTAGTGAGCGTGAAGTAACCAACCAAAATGGAACTACCACAAAACTTAATGTTATTGAGTTAGAGGCTGATGGGCATAAGATACAATGCACATTGTTTGGGGCTTATGTTGATGTGCTCAATGGTTTTCTTGGAGCTGGAGAAGTCCAAAATGTTGTTGTCATCATGCAGCTTGCAAAGGCCAAAAATTTTCAAGTTATTGACATGAAAATTGTAGACAAAATTCACATCCAAAACTGCATGAATTGTAGCGTTTTGTTATTTAACCCTACATGTGAAGAAAGTGTTAGTTTCAGGGCAAGGCAAGAAGAAGCTGTTGAAACTCTAACTCCTTTGACTTTAACCCAACTCAATGTTGAGACCCAAGTTCTTCCTGTTGATGAGTTTTTGTTCAATACCCCAAGAAGCACTCTGCAGGCTCTTAAAGATGCCACTACTATAATTTCTTTTTTTTTCATTGCTGTCATCCCTGATTCAAGGATGTTTTATTGTGAGAAGTGCAATAAACATGTGTCTAGAGTTTTTCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTTTTGTCATATTTGATAGAGATGCAAGTTTGCTTTTCAACATGGCTTGTGCTGATATGATTGAGGCACCAGGAGGGGCTGGTGGTGCTGGAGGTTTGCCTCCTCAAATTGCTGATATGGTTGAAAAAACTTGGTTGTTTAAGGTTGAGACCAAACCTACCTTTAATCCTAGATTTGAACAATCCTTTCGTGTTAGAAAGATATGCACGGATGTAGCCATCATCAATCAGTTTAAAGCAAAGTGGGACAATGAAGAGGTAACTTTTATGAAAAATACTAATGAGAATGGTTCTTTAAGTACTCTATTGCTGAAAGGGAAAGATGTTTTAGTTGATGGTTCAACAAATATCTTATCTCAGGACTTTGAGAGTGGGTCTGACAGTTCTGGAAAAGGGAAGGGGCTGATTCTTGAGGGAAAACCTGTTGAGGTTACTCAGGATTTGATGGAAAAGTTTTCTACAGCTGCTGTGAATCTTGCTGATGATTCACTTGAAATTATAACAGGAGACATTGTGCATGCTGTGGACAAAGGGAAAGGTTTTGTTGTCAATTTAGATGATGAGGAAGTTTCATTTGAGAAAGGCAAATCTGTTGTTGTAAAGTTAGATGATGACAAAGTTGCAGTTGACCAAGGGAAACTTGCTGTTGTCAACTTAAATGATGGAAAAGTTGCTTTTGACAAAGGGAAACAAGCTGTTGTGAAGTTAGCTGATGAGGAACTTGCTAAGGTGCAAGTTGTTAGTGAAGAGAAGATATGTGATGGTCCAACTAAGAGATTGAAGAAAAAATCTGCAGGCAAGAGAGTTTCACCTACACCACAAGATGAAGATGATAATACTCCCATAAAGCTTTTGAAGAGGGCTATTAAGATTGAAAAAATTGCTTAG 1923 0.3697 MAMFIADDNLFSKIEEINSDKSNWNCKAKIIRLWAVSDFNRPNIPFSIEMVLMDSEGAKIHATVRKTLIYKFKDDLREGKVYAFENMGVATNGGAYRTTNHRYKLNFQFTSIVQILSNQDIVMSPFNFTPIATIVGGSYDNDYLVDVIGMLTGVGSEREVTNQNGTTTKLNVIELEADGHKIQCTLFGAYVDVLNGFLGAGEVQNVVVIMQLAKAKNFQVIDMKIVDKIHIQNCMNCSVLLFNPTCEESVSFRARQEEAVETLTPLTLTQLNVETQVLPVDEFLFNTPRSTLQALKDATTIISFFFIAVIPDSRMFYCEKCNKHVSRVFPRFCIKVRVMDHTDSATFVIFDRDASLLFNMACADMIEAPGGAGGAGGLPPQIADMVEKTWLFKVETKPTFNPRFEQSFRVRKICTDVAIINQFKAKWDNEEVTFMKNTNENGSLSTLLLKGKDVLVDGSTNILSQDFESGSDSSGKGKGLILEGKPVEVTQDLMEKFSTAAVNLADDSLEIITGDIVHAVDKGKGFVVNLDDEEVSFEKGKSVVVKLDDDKVAVDQGKLAVVNLNDGKVAFDKGKQAVVKLADEELAKVQVVSEEKICDGPTKRLKKKSAGKRVSPTPQDEDDNTPIKLLKRAIKIEKIA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04736 640 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre13g04736 640 Gene3D - 307 424 IPR012340 -
Trre13g04736 640 SUPERFAMILY Nucleic acid-binding proteins 11 119 IPR012340 -
Trre13g04736 640 SUPERFAMILY Nucleic acid-binding proteins 126 257 IPR012340 -
Trre13g04736 640 CDD RPA1_DBD_B_like 146 256 - -
Trre13g04736 640 Gene3D - 10 115 IPR012340 -
Trre13g04736 640 Gene3D - 119 264 IPR012340 -
Trre13g04736 640 MobiDBLite consensus disorder prediction 602 626 - -
Trre13g04736 640 SUPERFAMILY Nucleic acid-binding proteins 309 418 IPR012340 -
Trre13g04736 640 CDD RPA1_DBD_A_like 27 113 - -
Trre13g04736 640 Pfam Replication factor-A C terminal domain 314 418 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04736 Trre-Chr13 54208028 54210915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04736 46 413 Core DNA Replication Machinery Family AT5G08020 20.545 8.01e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04736 - - tpra:123915045 691.419